2021

Akama-Garren EH, Li JX. Unbiased identification of clinical characteristics predictive of COVID-19 severity. Clin Exp Med. 2021 Jun 5:1–13. doi: 10.1007/s10238-021-00730-y. Epub ahead of print. PMID: 34089403; PMCID: PMC8178667.

Akama-Garren EH, Shah SA, Zinzuwadia AN, Bartuska A, Hashimoto M, Chu JT, Kruse GR, Cohen MJ. Outcomes of a Student-Led Telemedicine Clinic in Response to COVID-19. J Ambul Care Manage. 2021 Jul-Sep 01;44(3):197-206. doi: 10.1097/JAC.0000000000000380. PMID: 34016847; PMCID: PMC8148224.

Akama-Garren EH, Li JX. Prior immunosuppressive therapy is associated with mortality in COVID-19 patients: A retrospective study of 835 patients. J Med Virol. 2021 May 27. doi: 10.1002/jmv.27105. Epub ahead of print. PMID: 34042195.

Garcia-Beltran WF, Lam EC, Astudillo MG, Yang D, Miller TE, Feldman J, Hauser BM, Caradonna TM, Clayton KL, Nitido AD, Murali MR, Alter G, Charles RC, Dighe A, Branda JA, Lennerz JK, Lingwood D, Schmidt AG, Iafrate AJ, Balazs AB. COVID-19-neutralizing antibodies predict disease severity and survival. Cell. 2021 Jan 21;184(2):476-488.e11. doi: 10.1016/j.cell.2020.12.015. Epub 2020 Dec 15. PMID: 33412089; PMCID: PMC7837114.

Pany MJ, Chen L, Sheridan B, Huckman RS. Provider Teams Outperform Solo Providers In Managing Chronic Diseases And Could Improve The Value Of Care. Health Aff (Millwood). 2021 Mar;40(3):435-444. doi: 10.1377/hlthaff.2020.01580. PMID: 33646870.

Kiner E, Willie E, Vijaykumar B, Chowdhary K, Schmutz H, Chandler J, Schnell A, Thakore PI, LeGros G, Mostafavi S, Mathis D, Benoist C; Immunological Genome Project Consortium. Gut CD4+ T cell phenotypes are a continuum molded by microbes, not by TH archetypes. Nat Immunol. 2021 Jan 18. doi: 10.1038/s41590-020-00836-7. Epub ahead of print. PMID: 33462454.

Clark SA, Clark LE, Pan J, Coscia A, McKay LGA, Shankar S, Johnson RI, Brusic V, Choudhary MC, Regan J, Li JZ, Griffiths A, Abraham J. SARS-CoV-2 evolution in an immunocompromised host reveals shared neutralization escape mechanisms. Cell. 2021 Mar 16:S0092-8674(21)00355-X. doi: 10.1016/j.cell.2021.03.027. Epub ahead of print. PMID: 33831372; PMCID: PMC7962548.

Rodin RE, Dou Y, Kwon M, Sherman MA, D'Gama AM, Doan RN, Rento LM, Girskis KM, Bohrson CL, Kim SN, Nadig A, Luquette LJ, Gulhan DC; Brain Somatic Mosaicism Network, Park PJ, Walsh CA. The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing. Nat Neurosci. 2021 Jan 11. doi: 10.1038/s41593-020-00765-6. Epub ahead of print. PMID: 33432195.

Luengo A, Li Z, Gui DY, Sullivan LB, Zagorulya M, Do BT, Ferreira R, Naamati A, Ali A, Lewis CA, Thomas CJ, Spranger S, Matheson NJ, Vander Heiden MG. Increased demand for NAD+ relative to ATP drives aerobic glycolysis. Mol Cell. 2021 Feb 18;81(4):691-707.e6. doi: 10.1016/j.molcel.2020.12.012. Epub 2020 Dec 30. PMID: 33382985.

Brincat SL, Donoghue JA, Mahnke MK, Kornblith S, Lundqvist M, Miller EK. Interhemispheric transfer of working memories. Neuron. 2021 Mar 17;109(6):1055-1066.e4. doi: 10.1016/j.neuron.2021.01.016. Epub 2021 Feb 8. PMID: 33561399.

Jing J, d'Angremont E, Ebrahim S, Tabaeizadeh M, Ng M, Herlopian A, Dauwels J, Brandon Westover M. Rapid annotation of seizures and interictal-ictal-injury continuum EEG patterns. J Neurosci Methods. 2021 Jan 1;347:108956. doi: 10.1016/j.jneumeth.2020.108956. Epub 2020 Oct 21. PMID: 33099261; PMCID: PMC7744406.

Micalizzi DS, Ebright RY, Haber DA, Maheswaran S. Translational Regulation of Cancer Metastasis. Cancer Res. 2021 Feb 1;81(3):517-524. doi: 10.1158/0008-5472.CAN-20-2720. Epub 2021 Jan 21. PMID: 33479028; PMCID: PMC7854484.

Garcia-Beltran WF, Lam EC, Astudillo MG, Yang D, Miller TE, Feldman J, Hauser BM, Caradonna TM, Clayton KL, Nitido AD, Murali MR, Alter G, Charles RC, Dighe A, Branda JA, Lennerz JK, Lingwood D, Schmidt AG, Iafrate AJ, Balazs AB. COVID-19-neutralizing antibodies predict disease severity and survival. Cell. 2021 Jan 21;184(2):476-488.e11. doi: 10.1016/j.cell.2020.12.015. Epub 2020 Dec 15. PMID: 33412089; PMCID: PMC7837114.

Rodin RE, Dou Y, Kwon M, Sherman MA, D'Gama AM, Doan RN, Rento LM, Girskis KM, Bohrson CL, Kim SN, Nadig A, Luquette LJ, Gulhan DC; Brain Somatic Mosaicism Network, Park PJ, Walsh CA. The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing. Nat Neurosci. 2021 Jan 11. doi: 10.1038/s41593-020-00765-6. Epub ahead of print. PMID: 33432195.

Pany MJ, Chen L, Sheridan B, Huckman RS. Provider Teams Outperform Solo Providers In Managing Chronic Diseases And Could Improve The Value Of Care. Health Aff (Millwood). 2021 Mar;40(3):435-444. doi: 10.1377/hlthaff.2020.01580. PMID: 33646870.

Cramer AK, Plana D, Yang H, Carmack MM, Tian E, Sinha MS, Krikorian D, Turner D, Mo J, Li J, Gupta R, Manning H, Bourgeois FT, Yu SH, Sorger PK, LeBoeuf NR. Analysis of SteraMist ionized hydrogen peroxide technology in the sterilization of N95 respirators and other PPE. Sci Rep. 2021 Jan 21;11(1):2051. doi: 10.1038/s41598-021-81365-7. PMID: 33479334; PMCID: PMC7819989.

McAvoy M, Bui AN, Hansen C, Plana D, Said JT, Yu Z, Yang H, Freake J, Van C, Krikorian D, Cramer A, Smith L, Jiang L, Lee KJ, Li SJ, Beller B, Huggins K, Short MP, Yu SH, Mostaghimi A, Sorger PK, LeBoeuf NR. 3D Printed frames to enable reuse and improve the fit of N95 and KN95 respirators. BMC Biomed Eng. 2021 Jun 7;3(1):10. doi: 10.1186/s42490-021-00055-7. PMID: 34099062.

Rodin RE, Dou Y, Kwon M, Sherman MA, D'Gama AM, Doan RN, Rento LM, Girskis KM, Bohrson CL, Kim SN, Nadig A, Luquette LJ, Gulhan DC; Brain Somatic Mosaicism Network, Park PJ, Walsh CA. The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing. Nat Neurosci. 2021 Jan 11. doi: 10.1038/s41593-020-00765-6. Epub ahead of print. PMID: 33432195.

Sherman MA, Rodin RE, Genovese G, Dias C, Barton AR, Mukamel RE, Berger B, Park PJ, Walsh CA, Loh PR. Large mosaic copy number variations confer autism risk. Nat Neurosci. 2021 Jan 11. doi: 10.1038/s41593-020-00766-5. Epub ahead of print. PMID: 33432194.

Schiff AE, Linder AH, Luhembo SN, Banning S, Deymier MJ, Diefenbach TJ, Dickey AK, Tsibris AM, Balazs AB, Cho JL, Medoff BD, Walzl G, Wilkinson RJ, Burgers WA, Corleis B, Kwon DS. T cell-tropic HIV efficiently infects alveolar macrophages through contact with infected CD4+ T cells. Sci Rep. 2021 Feb 16;11(1):3890. doi: 10.1038/s41598-021-82066-x. PMID: 33594125; PMCID: PMC7886866.

Shareef SJ, Bevill SM, Raman AT, Aryee MJ, van Galen P, Hovestadt V, Bernstein BE. Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells. Nat Biotechnol. 2021 May 6. doi: 10.1038/s41587-021-00910-x. Epub ahead of print. PMID: 33958785.

Zhang ZZ, Zhang Y, He T, Sweeney CL, Baris S, Karakoc-Aydiner E, Yao Y, Ertem D, Matthews HF, Gonzaga-Jauregui C, Malech HL, Su HC, Ozen A, Smith KGC, Lenardo MJ. Homozygous IL37 mutation associated with infantile inflammatory bowel disease. Proc Natl Acad Sci U S A. 2021 Mar 9;118(10):e2009217118. doi: 10.1073/pnas.2009217118. PMID: 33674380.

Zhang Z, Ortega D, Rush A, Blankenship LR, Cheng ZJ, Moore RE, Tran MLN, Sandoval LG, Aboulhosn K, Watanabe S, Cortez KS, Perlman DH, Semmelhack MF, Miller Conrad LC. Antibiotic Adjuvant Activity Revealed in a Photoaffinity Approach to Determine the Molecular Target of Antipyocyanin Compounds. ACS Infect Dis. 2021 Feb 15. doi: 10.1021/acsinfecdis.0c00160. Epub ahead of print. PMID: 33587590.

2020

Morton SU, Agarwal R, Madden JA, Genetti CA, Brownstein CA, López-Giráldez F, Choi J, Seidman CE, Seidman JG, Lyon GJ, Agrawal PB. Congenital Heart Defects Due to TAF1 Missense Variants. Circ Genom Precis Med. 2020 Jun;13(3):e002843. doi: 10.1161/CIRCGEN.119.002843. Epub 2020 May 12. PMID: 32396742; PMCID: PMC7329268

Herkert JC, Verhagen JMA, Yotti R, Haghighi A, Phelan DG, James PA, Brown NJ, Stutterd C, Macciocca I, Leong K, Bulthuis MLC, van Bever Y, van Slegtenhorst MA, Boven LG, Roberts AE, Agarwal R, Seidman J, Lakdawala NK, Fernández-Avilés F, Burke MA, Pierpont ME, Braunlin E, ḈaÄŸlayan AO, Barge-Schaapveld DQCM, Birnie E, van Osch-Gevers L, van Langen IM, Jongbloed JDH, Lockhart PJ, Amor DJ, Seidman CE, van de Laar IMBH. Expanding the clinical and genetic spectrum of ALPK3 variants: Phenotypes identified in pediatric cardiomyopathy patients and adults with heterozygous variants. Am Heart J. 2020 Jul;225:108-119. doi: 10.1016/j.ahj.2020.03.023. Epub 2020 Apr 21. PMID: 32480058.

Toepfer CN, Garfinkel AC, Venturini G, Wakimoto H, Repetti G, Alamo L, Sharma A, Agarwal R, Ewoldt JF, Cloonan P, Letendre J, Lun M, Olivotto I, Colan S, Ashley E, Jacoby D, Michels M, Redwood CS, Watkins HC, Day SM, Staples JF, Padrón R, Chopra A, Ho CY, Chen CS, Pereira AC, Seidman JG, Seidman CE. Myosin Sequestration Regulates Sarcomere Function, Cardiomyocyte Energetics, and Metabolism, Informing the Pathogenesis of Hypertrophic Cardiomyopathy. Circulation. 2020 Mar 10;141(10):828-842. doi: 10.1161/CIRCULATIONAHA.119.042339. Epub 2020 Jan 27. Erratum in: Circulation. 2020 Mar 10;141(10):e645. PMID: 31983222; PMCID: PMC7077965

Ahuja Y, Zhou D, He Z, Sun J, Castro VM, Gainer V, Murphy SN, Hong C, Cai T. sureLDA: A multidisease automated phenotyping method for the electronic health record. J Am Med Inform Assoc. 2020 Jun 17:ocaa079. doi: 10.1093/jamia/ocaa079. Epub ahead of print. PMID: 32548637.

Sonabend W A, Cai W, Ahuja Y, Ananthakrishnan A, Xia Z, Yu S, Hong C. Automated ICD coding via unsupervised knowledge integration (UNITE). Int J Med Inform. 2020 Jul;139:104135. doi: 10.1016/j.ijmedinf.2020.104135. Epub 2020 Apr 4. PMID: 32361145.

Li Y, Nair P, Lu XH, Wen Z, Wang Y, Dehaghi AAK, Miao Y, Liu W, Ordog T, Biernacka JM, Ryu E, Olson JE, Frye MA, Liu A, Guo L, Marelli A, Ahuja Y, Davila-Velderrain J, Kellis M. Inferring multimodal latent topics from electronic health records. Nat Commun. 2020 May 21;11(1):2536. doi: 10.1038/s41467-020-16378-3. PMID: 32439869; PMCID: PMC7242436.

Tedeschi SK, Cai T, He Z, Ahuja Y, Hong C, Yates KA, Dahal K, Xu C, Lyu H, Yoshida K, Solomon DH, Cai T, Liao KP. Classifying Pseudogout using Machine Learning Approaches with Electronic Health Record Data. Arthritis Care Res (Hoboken). 2020 Jan 7:10.1002/acr.24132. doi: 10.1002/acr.24132. Epub ahead of print. PMID: 31910317; PMCID: PMC7338229.

Huang AY, Li P, Rodin RE, Kim SN, Dou Y, Kenny CJ, Akula SK, Hodge RD, Bakken TE, Miller JA, Lein ES, Park PJ, Lee EA, Walsh CA. Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain. Proc Natl Acad Sci U S A. 2020 Jun 23;117(25):13886-13895. doi: 10.1073/pnas.2006163117. Epub 2020 Jun 10. PMID: 32522880; PMCID: PMC7322034.

Lin AE, Diehl WE, Cai Y, Finch CL, Akusobi C, Kirchdoerfer RN, Bollinger L, Schaffner SF, Brown EA, Saphire EO, Andersen KG, Kuhn JH, Luban J, Sabeti PC. Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111. Viruses. 2020 Jan 15;12(1):E105. doi: 10.3390/v12010105. PMID: 31952352.

Greenfield DA, Schmidt HR, Skiba MA, Mandler MD, Anderson JR, Sliz P, Kruse AC. Virtual Screening for Ligand Discovery at the σ1 Receptor. ACS Med Chem Lett. 2020 Jul 27;11(8):1555-1561. doi: 10.1021/acsmedchemlett.9b00314. PMID: 32832023; PMCID: PMC7430954.

Berger AG, Chou JJ, Hammond PT. Approaches to Modulate the Chronic Wound Environment Using Localized Nucleic Acid Delivery. Adv Wound Care (New Rochelle). 2020 Jul 7. doi: 10.1089/wound.2020.1167. Epub ahead of print. PMID: 32496978.

Scott, K. W.*; Berger, A. G.*; Stuart, J. C.*; Hundert, E. M. Re-engaging students in medical school accreditation: the independent student analysis action (ISA2) approach. MedEdPublish. 2020.

Reardon R, Beyer L, Carpenter K, Irwin M, Kester K, Laird J, Moore C, Shah P, Conrad R. Medical Student Development of K-12 Educational Resources During the COVID-19 Pandemic. Acad Pediatr. 2020 Aug;20(6):763-764. doi: 10.1016/j.acap.2020.05.022. Epub 2020 Jun 2. PMID: 32502534; PMCID: PMC7266567.

Yip MCJ, Bodnar NO, Rapoport TA. Ddi1 is a ubiquitin-dependent protease. Proc Natl Acad Sci U S A. 2020 Apr 7;117(14):7776-7781. doi: 10.1073/pnas.1902298117. Epub 2020 Mar 19. PMID: 32193351; PMCID: PMC7149228.

Holmgren AJ, Botelho A, Brandt AM. A History of Prescription Drug Monitoring Programs in the United States: Political Appeal and Public Health Efficacy. Am J Public Health. 2020 Aug;110(8):1191-1197. doi: 10.2105/AJPH.2020.305696. Epub 2020 Jun 18. PMID: 32552023; PMCID: PMC7349461.

Brandt AM, Botelho A. Not a Perfect Storm - Covid-19 and the Importance of Language. N Engl J Med. 2020 Apr 16;382(16):1493-1495. doi: 10.1056/NEJMp2005032. PMID: 32294345.

Li Y, Ivica NA, Dong T, Papageorgiou DP, He Y, Brown DR, Kleyman M, Hu G, Chen WW, Sullivan LB, Del Rosario A, Hammond PT, Vander Heiden MG, Chen J. MFSD7C switches mitochondrial ATP synthesis to thermogenesis in response to heme. Nat Commun. 2020 Sep 24;11(1):4837. doi: 10.1038/s41467-020-18607-1. PMID: 32973183; PMCID: PMC7515921.

Xie G, Ivica NA, Jia B, Li Y, Dong H, Liang Y, Brown D, Rizwan R, Chen J. CAR-T cells targeting a nucleophosmin neoepitope exhibit potent specific activity in mouse models of acute myeloid leukaemia. Nat Biomed Eng. 2020 Oct 12. doi: 10.1038/s41551-020-00625-5. Epub ahead of print. PMID: 33046866.

Miller TE, Garcia Beltran WF, Bard AZ, Gogakos T, Anahtar MN, Astudillo MG, Yang D, Thierauf J, Fisch AS, Mahowald GK, Fitzpatrick MJ, Nardi V, Feldman J, Hauser BM, Caradonna TM, Marble HD, Ritterhouse LL, Turbett SE, Batten J, Georgantas NZ, Alter G, Schmidt AG, Harris JB, Gelfand JA, Poznansky MC, Bernstein BE, Louis DN, Dighe A, Charles RC, Ryan ET, Branda JA, Pierce VM, Murali MR, Iafrate AJ, Rosenberg ES, Lennerz JK. Clinical sensitivity and interpretation of PCR and serological COVID-19 diagnostics for patients presenting to the hospital. FASEB J. 2020 Aug 28. doi: 10.1096/fj.202001700RR. Epub ahead of print. PMID: 32856766; PMCID: PMC7461169.

Tostanoski LH, Wegmann F, Martinot AJ, Loos C, McMahan K, Mercado NB, Yu J, Chan CN, Bondoc S, Starke CE, Nekorchuk M, Busman-Sahay K, Piedra-Mora C, Wrijil LM, Ducat S, Custers J, Atyeo C, Fischinger S, Burke JS, Feldman J, Hauser BM, Caradonna TM, Bondzie EA, Dagotto G, Gebre MS, Jacob-Dolan C, Lin Z, Mahrokhian SH, Nampanya F, Nityanandam R, Pessaint L, Porto M, Ali V, Benetiene D, Tevi K, Andersen H, Lewis MG, Schmidt AG, Lauffenburger DA, Alter G, Estes JD, Schuitemaker H, Zahn R, Barouch DH. Ad26 vaccine protects against SARS-CoV-2 severe clinical disease in hamsters. Nat Med. 2020 Sep 3. doi: 10.1038/s41591-020-1070-6. Epub ahead of print. PMID: 32884153. PMCID: PMC7671939.

Kaneko N, Kuo HH, Boucau J, Farmer JR, Allard-Chamard H, Mahajan VS, Piechocka-Trocha A, Lefteri K, Osborn M, Bals J, Bartsch YC, Bonheur N, Caradonna TM, Chevalier J, Chowdhury F, Diefenbach TJ, Einkauf K, Fallon J, Feldman J, Finn KK, Garcia-Broncano P, Hartana CA, Hauser BM, Jiang C, Kaplonek P, Karpell M, Koscher EC, Lian X, Liu H, Liu J, Ly NL, Michell AR, Rassadkina Y, Seiger K, Sessa L, Shin S, Singh N, Sun W, Sun X, Ticheli HJ, Waring MT, Zhu AL, Alter G, Li JZ, Lingwood D, Schmidt AG, Lichterfeld M, Walker BD, Yu XG, Padera RF Jr, Pillai S; Massachusetts Consortium on Pathogen Readiness Specimen Working Group. Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19. Cell. 2020 Aug 19:S0092-8674(20)31067-9. doi: 10.1016/j.cell.2020.08.025. Epub ahead of print. PMID: 32877699; PMCID: PMC7437499.

Atyeo C, Fischinger S, Zohar T, Slein MD, Burke J, Loos C, McCulloch DJ, Newman KL, Wolf C, Yu J, Shuey K, Feldman J, Hauser BM, Caradonna T, Schmidt AG, Suscovich TJ, Linde C, Cai Y, Barouch D, Ryan ET, Charles RC, Lauffenburger D, Chu H, Alter G. Distinct Early Serological Signatures Track with SARS-CoV-2 Survival. Immunity. 2020 Jul 30:S1074-7613(20)30327-7. doi: 10.1016/j.immuni.2020.07.020. Epub ahead of print. PMID: 32783920; PMCID: PMC7392190.

Roy V, Fischinger S, Atyeo C, Slein M, Loos C, Balazs A, Luedemann C, Astudillo MG, Yang D, Wesemann DR, Charles R, Lafrate AJ, Feldman J, Hauser B, Caradonna T, Miller TE, Murali MR, Baden L, Nilles E, Ryan E, Lauffenburger D, Beltran WG, Alter G. SARS-CoV-2-specific ELISA development. J Immunol Methods. 2020 Aug 8:112832. doi: 10.1016/j.jim.2020.112832. Epub ahead of print. PMID: 32780998; PMCID: PMC7414735.

Kaneko N, Kuo HH, Boucau J, Farmer JR, Allard-Chamard H, Mahajan VS, Piechocka-Trocha A, Lefteri K, Osborn M, Bals J, Bartsch YC, Bonheur N, Caradonna TM, Chevalier J, Chowdhury F, Diefenbach TJ, Einkauf K, Fallon J, Feldman J, Finn KK, Garcia-Broncano P, Hartana CA, Hauser BM, Jiang C, Kaplonek P, Karpell M, Koscher EC, Lian X, Liu H, Liu J, Ly NL, Michell AR, Rassadkina Y, Seiger K, Sessa L, Shin S, Singh N, Sun W, Sun X, Ticheli HJ, Waring MT, Zhu AL, Li J, Lingwood D, Schmidt AG, Lichterfeld M, Walker BD, Yu X, Padera RF, Pillai S, Group MCOPRSW. The Loss of Bcl-6 Expressing T Follicular Helper Cells and the Absence of Germinal Centers in COVID-19. SSRN [Preprint]. 2020 Jul 16:3652322. doi: 10.2139/ssrn.3652322. PMID: 32742244; PMCID: PMC7385482.

Kaneko N, Kuo HH, Boucau J, Farmer JR, Allard-Chamard H, Mahajan VS, Piechocka-Trocha A, Lefteri K, Osborn M, Bals J, Bartsch YC, Bonheur N, Caradonna TM, Chevalier J, Chowdhury F, Diefenbach TJ, Einkauf K, Fallon J, Feldman J, Finn KK, Garcia-Broncano P, Hartana CA, Hauser BM, Jiang C, Kaplonek P, Karpell M, Koscher EC, Lian X, Liu H, Liu J, Ly NL, Michell AR, Rassadkina Y, Seiger K, Sessa L, Shin S, Singh N, Sun W, Sun X, Ticheli HJ, Waring MT, Zhu AL, Alter G, Li JZ, Lingwood D, Schmidt AG, Lichterfeld M, Walker BD, Yu XG, Padera RF Jr, Pillai S; Massachusetts Consortium on Pathogen Readiness Specimen Working Group. Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19. Cell. 2020 Oct 1;183(1):143-157.e13. doi: 10.1016/j.cell.2020.08.025. Epub 2020 Aug 19. PMID: 32877699; PMCID: PMC7437499.

Mercado NB, Zahn R, Wegmann F, Loos C, Chandrashekar A, Yu J, Liu J, Peter L, McMahan K, Tostanoski LH, He X, Martinez DR, Rutten L, Bos R, van Manen D, Vellinga J, Custers J, Langedijk JP, Kwaks T, Bakkers MJG, Zuijdgeest D, Huber SKR, Atyeo C, Fischinger S, Burke JS, Feldman J, Hauser BM, Caradonna TM, Bondzie EA, Dagotto G, Gebre MS, Hoffman E, Jacob-Dolan C, Kirilova M, Li Z, Lin Z, Mahrokhian SH, Maxfield LF, Nampanya F, Nityanandam R, Nkolola JP, Patel S, Ventura JD, Verrington K, Wan H, Pessaint L, Ry AV, Blade K, Strasbaugh A, Cabus M, Brown R, Cook A, Zouantchangadou S, Teow E, Andersen H, Lewis MG, Cai Y, Chen B, Schmidt AG, Reeves RK, Baric RS, Lauffenburger DA, Alter G, Stoffels P, Mammen M, Hoof JV, Schuitemaker H, Barouch DH. Single-shot Ad26 vaccine protects against SARS-CoV-2 in rhesus macaques. Nature. 2020 Jul 30. doi: 10.1038/s41586-020-2607-z. Epub ahead of print. PMID: 32731257.

Bajic G, Maron MJ, Caradonna TM, Tian M, Mermelstein A, Fera D, Kelsoe G, Kuraoka M, Schmidt AG. Structure-Guided Molecular Grafting of a Complex Broadly Neutralizing Viral Epitope. ACS Infect Dis. 2020 May 8;6(5):1182-1191. doi: 10.1021/acsinfecdis.0c00008. Epub 2020 Apr 20. PMID: 32267676; PMCID: PMC7291361.

Clausen TM, Sandoval DR, Spliid CB, Pihl J, Painter CD, Thacker BE, Glass CA, Narayanan A, Majowicz SA, Zhang Y, Torres JL, Golden GJ, Porell R, Garretson AF, Laubach L, Feldman J, Yin X, Pu Y, Hauser B, Caradonna TM, Kellman BP, Martino C, Gordts PLSM, Leibel SL, Chanda SK, Schmidt AG, Godula K, Jose J, Corbett KD, Ward AB, Carlin AF, Esko JD. SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2. bioRxiv [Preprint]. 2020 Jul 14:2020.07.14.201616. doi: 10.1101/2020.07.14.201616. PMID: 32699853; PMCID: PMC7373134.

Norman M, Gilboa T, Ogata AF, Maley AM, Cohen L, Cai Y, Zhang J, Feldman JE, Hauser BM, Caradonna TM, Chen B, Schmidt AG, Alter G, Charles RC, Ryan ET, Walt DR. Ultra-Sensitive High-Resolution Profiling of Anti-SARS-CoV-2 Antibodies for Detecting Early Seroconversion in COVID-19 Patients. medRxiv [Preprint]. 2020 May 2:2020.04.28.20083691. doi: 10.1101/2020.04.28.20083691. PMID: 32511657; PMCID: PMC7277013.

Iyer AS, Jones FK, Nodoushani A, Kelly M, Becker M, Slater D, Mills R, Teng E, Kamruzzaman M, Garcia-Beltran WF, Astudillo M, Yang D, Miller TE, Oliver E, Fischinger S, Atyeo C, Iafrate AJ, Calderwood SB, Lauer SA, Yu J, Li Z, Feldman J, Hauser BM, Caradonna TM, Branda JA, Turbett SE, LaRocque RC, Mellon G, Barouch DH, Schmidt AG, Azman AS, Alter G, Ryan ET, Harris JB, Charles RC. Persistence and decay of human antibody responses to the receptor binding domain of SARS-CoV-2 spike protein in COVID-19 patients. Sci Immunol. 2020 Oct 8;5(52):eabe0367. doi: 10.1126/sciimmunol.abe0367. PMID: 33033172.

Cathcart AM, Bird GH, Wales TE, Herce HD, Harvey EP, Hauseman ZJ, Newman CE, Adhikary U, Prew MS, Oo T, Lee S, Engen JR, Walensky LD. Targeting a helix-in-groove interaction between E1 and E2 blocks ubiquitin transfer. Nat Chem Biol. 2020 Aug 17. doi: 10.1038/s41589-020-0625-7. Epub ahead of print. PMID: 32807965.

Ben-Nun Y, Seo HS, Harvey EP, Hauseman ZJ, Wales TE, Newman CE, Cathcart AM, Engen JR, Dhe-Paganon S, Walensky LD. Identification of a Structural Determinant for Selective Targeting of HDMX. Structure. 2020 Jul 7;28(7):847-857.e5. doi: 10.1016/j.str.2020.04.011. Epub 2020 Apr 30. PMID: 32359398; PMCID: PMC7427690.

St Laurent JD, Gockley AA, Cathcart AM, Baranov E, Kolin DL, Worley MJ Jr. Serous borderline tumor of the ovary with isolated cardiophrenic lymph node spread at diagnosis. Gynecol Oncol Rep. 2020 Jun 1;33:100586. doi: 10.1016/j.gore.2020.100586. PMID: 32529019; PMCID: PMC7276423.

Zhou H, Hu R, Tang O, Hu C, Tang L, Chang K, Shen Q, Wu J, Zou B, Xiao B, Boxerman J, Chen W, Huang RY, Yang L, Bai HX, Zhu C. Automatic Machine Learning to Differentiate Pediatric Posterior Fossa Tumors on Routine MR Imaging. AJNR Am J Neuroradiol. 2020 Jul;41(7):1279-1285. doi: 10.3174/ajnr.A6621. PMID: 32661052; PMCID: PMC7357647.

Chang K, Beers AL, Brink L, Patel JB, Singh P, Arun NT, Hoebel KV, Gaw N, Shah M, Pisano ED, Tilkin M, Coombs LP, Dreyer KJ, Allen B, Agarwal S, Kalpathy-Cramer J. Multi-Institutional Assessment and Crowdsourcing Evaluation of Deep Learning for Automated Classification of Breast Density. J Am Coll Radiol. 2020 Jun 24:S1546-1440(20)30539-1. doi: 10.1016/j.jacr.2020.05.015. Epub ahead of print. PMID: 32592660.

Beers A, Brown J, Chang K, Hoebel K, Patel J, Ly KI, Tolaney SM, Brastianos P, Rosen B, Gerstner ER, Kalpathy-Cramer J. DeepNeuro: an open-source deep learning toolbox for neuroimaging. Neuroinformatics. 2020 Jun 23. doi: 10.1007/s12021-020-09477-5. Epub ahead of print. PMID: 32578020.

Luo YH, Xi IL, Wang R, Abdallah HO, Wu J, Vance AZ, Chang K, Kohi M, Jones L, Reddy S, Zhang ZS, Bai HX, Shlansky-Goldberg R. Deep Learning Based on MR Imaging for Predicting Outcome of Uterine Fibroid Embolization. J Vasc Interv Radiol. 2020 Jun;31(6):1010-1017.e3. doi: 10.1016/j.jvir.2019.11.032. Epub 2020 May 4. PMID: 32376183.

Bai HX, Wang R, Xiong Z, Hsieh B, Chang K, Halsey K, Tran TML, Choi JW, Wang DC, Shi LB, Mei J, Jiang XL, Pan I, Zeng QH, Hu PF, Li YH, Fu FX, Huang RY, Sebro R, Yu QZ, Atalay MK, Liao WH. Artificial Intelligence Augmentation of Radiologist Performance in Distinguishing COVID-19 from Pneumonia of Other Origin at Chest CT. Radiology. 2020 Sep;296(3):E156-E165. doi: 10.1148/radiol.2020201491. Epub 2020 Apr 27. PMID: 32339081; PMCID: PMC7233483.

Zhao Y, Chang M, Wang R, Xi IL, Chang K, Huang RY, Vallières M, Habibollahi P, Dagli MS, Palmer M, Zhang PJ, Silva AC, Yang L, Soulen MC, Zhang Z, Bai HX, Stavropoulos SW. Deep Learning Based on MRI for Differentiation of Low- and High-Grade in Low-Stage Renal Cell Carcinoma. J Magn Reson Imaging. 2020 Mar 28. doi: 10.1002/jmri.27153. Epub ahead of print. PMID: 32222054

Peng J, Zhou H, Tang O, Chang K, Wang P, Zeng X, Shen Q, Wu J, Xiao Y, Patel SH, Hu C, Jin K, Xiao B, Boxerman J, Gao X, Wen PY, Bai HX, Huang RY, Yang L. Evaluation of RAPNO criteria in medulloblastoma and other leptomeningeal seeding tumors using MRI and clinical data. Neuro Oncol. 2020 Mar 26:noaa072. doi: 10.1093/neuonc/noaa072. Epub ahead of print. PMID: 32215549.

Li MD, Chang K, Bearce B, Chang CY, Huang AJ, Campbell JP, Brown JM, Singh P, Hoebel KV, ErdoÄŸmuÅŸ D, Ioannidis S, Palmer WE, Chiang MF, Kalpathy-Cramer J. Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging. NPJ Digit Med. 2020 Mar 26;3:48. doi: 10.1038/s41746-020-0255-1. PMID: 32258430; PMCID: PMC7099081.

Balachandar N, Chang K, Kalpathy-Cramer J, Rubin DL. Accounting for data variability in multi-institutional distributed deep learning for medical imaging. J Am Med Inform Assoc. 2020 May 1;27(5):700-708. doi: 10.1093/jamia/ocaa017. PMID: 32196092; PMCID: PMC7309257.

Xi IL, Zhao Y, Wang R, Chang M, Purkayastha S, Chang K, Huang RY, Silva AC, Vallières M, Habibollahi P, Fan Y, Zou B, Gade TP, Zhang PJ, Soulen MC, Zhang Z, Bai HX, Stavropoulos SW. Deep Learning to Distinguish Benign from Malignant Renal Lesions Based on Routine MR Imaging. Clin Cancer Res. 2020 Apr 15;26(8):1944-1952. doi: 10.1158/1078-0432.CCR-19-0374. Epub 2020 Jan 14. PMID: 31937619.

Gerstner ER, Emblem KE, Chang K, Vakulenko-Lagun B, Yen YF, Beers AL, Dietrich J, Plotkin SR, Catana C, Hooker JM, Duda DG, Rosen B, Kalpathy-Cramer J, Jain RK, Batchelor T. Bevacizumab Reduces Permeability and Concurrent Temozolomide Delivery in a Subset of Patients with Recurrent Glioblastoma. Clin Cancer Res. 2020 Jan 1;26(1):206-212. doi: 10.1158/1078-0432.CCR-19-1739. Epub 2019 Sep 26. PMID: 31558474; PMCID: PMC7139851.

Sommers BD, Chen L, Blendon RJ, Orav EJ, Epstein AM. Medicaid Work Requirements In Arkansas: Two-Year Impacts On Coverage, Employment, And Affordability Of Care. Health Aff (Millwood). 2020 Sep;39(9):1522-1530. doi: 10.1377/hlthaff.2020.00538. PMID: 32897784.

Alimova M, Sidhom EH, Satyam A, Dvela-Levitt M, Melanson M, Chamberlain BT, Alper SL, Santos J, Gutierrez J, Subramanian A, Grinkevich E, Bricio ER, Kim C, Clark A, Watts A, Thompson R, Marshall J, Pablo JL, Coraor J, Roignot J, Vernon KA, Keller K, Campbell A, Emani M, Racette M, Bazua-Valenti S, Padovano V, Weins A, McAdoo SP, Tam FWK, Ronco L, Wagner F, Tsokos GC, Shaw JL, Greka A. A High Content Screen for Mucin-1-Reducing Compounds Identifies Fostamatinib as a Candidate for Rapid Repurposing for Acute Lung Injury during the COVID-19 pandemic. bioRxiv [Preprint]. 2020 Jun 30:2020.06.30.180380. doi: 10.1101/2020.06.30.180380. PMID: 32637960; PMCID: PMC7337390.

Kuehl CJ, D'Gama JD, Warr AR, Waldor MK. An Oral Inoculation Infant Rabbit Model for Shigella Infection. mBio. 2020 Jan 21;11(1):e03105-19. doi: 10.1128/mBio.03105-19. PMID: 31964739; PMCID: PMC6974573.

Drosu NC, Edelman ER, Housman DE. Tenofovir prodrugs potently inhibit Epstein-Barr virus lytic DNA replication by targeting the viral DNA polymerase. Proc Natl Acad Sci U S A. 2020 Jun 2;117(22):12368-12374. doi: 10.1073/pnas.2002392117. Epub 2020 May 14. PMID: 32409608; PMCID: PMC7275665.

Fumeaux NF, Ebrahim S, Coughlin BF, Kadambi A, Azmi A, Xu JX, Abou Jaoude M, Nagaraj SB, Thomson KE, Newell TG, Metcalf CS, Wilcox KS, Kimchi EY, Moraes MFD, Cash SS. Accurate detection of spontaneous seizures using a generalized linear model with external validation. Epilepsia. 2020 Aug 6. doi: 10.1111/epi.16628. Epub ahead of print. PMID: 32761902.

Ebright RY, Lee S, Wittner BS, Niederhoffer KL, Nicholson BT, Bardia A, Truesdell S, Wiley DF, Wesley B, Li S, Mai A, Aceto N, Vincent-Jordan N, Szabolcs A, Chirn B, Kreuzer J, Comaills V, Kalinich M, Haas W, Ting DT, Toner M, Vasudevan S, Haber DA, Maheswaran S, Micalizzi DS. Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis. Science. 2020 Mar 27;367(6485):1468-1473. doi: 10.1126/science.aay0939. Epub 2020 Feb 6. PMID: 32029688.

Ebright RY, Zachariah MA, Micalizzi DS, Wittner BS, Niederhoffer KL, Nieman LT, Chirn B, Wiley DF, Wesley B, Shaw B, Nieblas-Bedolla E, Atlas L, Szabolcs A, Iafrate AJ, Toner M, Ting DT, Brastianos PK, Haber DA, Maheswaran S. HIF1A signaling selectively supports proliferation of breast cancer in the brain. Nat Commun. 2020 Dec 9;11(1):6311. doi: 10.1038/s41467-020-20144-w. PMID: 33298946.

Fan LZ, Kheifets S, Böhm UL, Wu H, Piatkevich KD, Xie ME, Parot V, Ha Y, Evans KE, Boyden ES, Takesian AE, Cohen AE. All-Optical Electrophysiology Reveals the Role of Lateral Inhibition in Sensory Processing in Cortical Layer 1. Cell. 2020 Feb 6;180(3):521-535.e18. doi: 10.1016/j.cell.2020.01.001. Epub 2020 Jan 23. PMID: 31978320; PMCID: PMC7259440.

Fadzen CM, Wolfe JM, Zhou W, Cho CF, von Spreckelsen N, Hutchinson KT, Lee YC, Chiocca EA, Lawler SE, Yilmaz OH, Lippard SJ, Pentelute BL. A Platinum(IV) Prodrug-Perfluoroaryl Macrocyclic Peptide Conjugate Enhances Platinum Uptake in the Brain. J Med Chem. 2020 Jul 9;63(13):6741-6747. doi: 10.1021/acs.jmedchem.0c00022. Epub 2020 Jun 26. PMID: 32410451.

Słabicki M, Kozicka Z, Petzold G, Li YD, Manojkumar M, Bunker RD, Donovan KA, Sievers QL, Koeppel J, Suchyta D, Sperling AS, Fink EC, Gasser JA, Wang LR, Corsello SM, Sellar RS, Jan M, Gillingham D, Scholl C, Fröhling S, Golub TR, Fischer ES, Thomä NH, Ebert BL. The CDK inhibitor CR8 acts as a molecular glue degrader that depletes cyclin K. Nature. 2020 Sep;585(7824):293-297. doi: 10.1038/s41586-020-2374-x. Epub 2020 Jun 3. PMID: 32494016; PMCID: PMC7486275.

Ge JY, Shu S, Kwon M, Jovanović B, Murphy K, Gulvady A, Fassl A, Trinh A, Kuang Y, Heavey GA, Luoma A, Paweletz C, Thorner AR, Wucherpfennig KW, Qi J, Brown M, Sicinski P, McDonald TO, Pellman D, Michor F, Polyak K. Acquired resistance to combined BET and CDK4/6 inhibition in triple-negative breast cancer. Nat Commun. 2020 May 11;11(1):2350. doi: 10.1038/s41467-020-16170-3. PMID: 32393766; PMCID: PMC7214447.

Shu S, Wu HJ, Ge JY, Zeid R, Harris IS, Jovanović B, Murphy K, Wang B, Qiu X, Endress JE, Reyes J, Lim K, Font-Tello A, Syamala S, Xiao T, Reddy Chilamakuri CS, Papachristou EK, D'Santos C, Anand J, Hinohara K, Li W, McDonald TO, Luoma A, Modiste RJ, Nguyen QD, Michel B, Cejas P, Kadoch C, Jaffe JD, Wucherpfennig KW, Qi J, Liu XS, Long H, Brown M, Carroll JS, Brugge JS, Bradner J, Michor F, Polyak K. Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer. Mol Cell. 2020 Jun 18;78(6):1096-1113.e8. doi: 10.1016/j.molcel.2020.04.027. Epub 2020 May 15. PMID: 32416067; PMCID: PMC7306005.

Ge P, Dawson VL, Dawson TM. PINK1 and Parkin mitochondrial quality control: a source of regional vulnerability in Parkinson's disease. Mol Neurodegener. 2020 Mar 13;15(1):20. doi: 10.1186/s13024-020-00367-7. PMID: 32169097; PMCID: PMC7071653.

Oberfeld B, Achanta A, Carpenter K, Chen P, Gilette NM, Langat P, Said JT, Schiff AE, Zhou AS, Barczak AK, Pillai S. SnapShot: COVID-19. Cell. 2020 May 14;181(4):954-954.e1. doi: 10.1016/j.cell.2020.04.013. Epub 2020 Apr 30. PMID: 32413300; PMCID: PMC7190493.

Harris JM, Wang AY, Boulanger-Weill J, Santoriello C, Foianini S, Lichtman JW, Zon LI, Arlotta P. Long-Range Optogenetic Control of Axon Guidance Overcomes Developmental Boundaries and Defects. Dev Cell. 2020 Jun 8;53(5):577-588.e7. doi: 10.1016/j.devcel.2020.05.009. PMID: 32516597; PMCID: PMC7375170.

Hauser BM, Gupta S, Xu E, Wu K, Bernstock JD, Chua M, Khawaja AM, Smith TR, Dunn IF, Bergmark RW, Bi WL. Impact of insurance on hospital course and readmission after resection of benign meningioma. J Neurooncol. 2020 Jul 11. doi: 10.1007/s11060-020-03581-x. Epub ahead of print. PMID: 32654076.

Miller TE, Garcia Beltran WF, Bard AZ, Gogakos T, Anahtar MN, Astudillo MG, Yang D, Thierauf J, Fisch AS, Mahowald GK, Fitzpatrick MJ, Nardi V, Feldman J, Hauser BM, Caradonna TM, Marble HD, Ritterhouse LL, Turbett SE, Batten J, Georgantas NZ, Alter G, Schmidt AG, Harris JB, Gelfand JA, Poznansky MC, Bernstein BE, Louis DN, Dighe A, Charles RC, Ryan ET, Branda JA, Pierce VM, Murali MR, Iafrate AJ, Rosenberg ES, Lennerz JK. Clinical sensitivity and interpretation of PCR and serological COVID-19 diagnostics for patients presenting to the hospital. FASEB J. 2020 Aug 28. doi: 10.1096/fj.202001700RR. Epub ahead of print. PMID: 32856766; PMCID: PMC7461169.

Kaneko N, Kuo HH, Boucau J, Farmer JR, Allard-Chamard H, Mahajan VS, Piechocka-Trocha A, Lefteri K, Osborn M, Bals J, Bartsch YC, Bonheur N, Caradonna TM, Chevalier J, Chowdhury F, Diefenbach TJ, Einkauf K, Fallon J, Feldman J, Finn KK, Garcia-Broncano P, Hartana CA, Hauser BM, Jiang C, Kaplonek P, Karpell M, Koscher EC, Lian X, Liu H, Liu J, Ly NL, Michell AR, Rassadkina Y, Seiger K, Sessa L, Shin S, Singh N, Sun W, Sun X, Ticheli HJ, Waring MT, Zhu AL, Alter G, Li JZ, Lingwood D, Schmidt AG, Lichterfeld M, Walker BD, Yu XG, Padera RF Jr, Pillai S; Massachusetts Consortium on Pathogen Readiness Specimen Working Group. Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19. Cell. 2020 Aug 19:S0092-8674(20)31067-9. doi: 10.1016/j.cell.2020.08.025. Epub ahead of print. PMID: 32877699; PMCID: PMC7437499.

Iyer AS, Jones FK, Nodoushani A, Kelly M, Becker M, Slater D, Mills R, Teng E, Kamruzzaman M, Garcia-Beltran WF, Astudillo M, Yang D, Miller TE, Oliver E, Fischinger S, Atyeo C, Iafrate AJ, Calderwood SB, Lauer SA, Yu J, Li Z, Feldman J, Hauser BM, Caradonna TM, Branda JA, Turbett SE, LaRocque RC, Mellon G, Barouch DH, Schmidt AG, Azman AS, Alter G, Ryan ET, Harris JB, Charles RC. Persistence and decay of human antibody responses to the receptor binding domain of SARS-CoV-2 spike protein in COVID-19 patients. Sci Immunol. 2020 Oct 8;5(52):eabe0367. doi: 10.1126/sciimmunol.abe0367. PMID: 33033172.

Mercado NB, Zahn R, Wegmann F, Loos C, Chandrashekar A, Yu J, Liu J, Peter L, McMahan K, Tostanoski LH, He X, Martinez DR, Rutten L, Bos R, van Manen D, Vellinga J, Custers J, Langedijk JP, Kwaks T, Bakkers MJG, Zuijdgeest D, Rosendahl Huber SK, Atyeo C, Fischinger S, Burke JS, Feldman J, Hauser BM, Caradonna TM, Bondzie EA, Dagotto G, Gebre MS, Hoffman E, Jacob-Dolan C, Kirilova M, Li Z, Lin Z, Mahrokhian SH, Maxfield LF, Nampanya F, Nityanandam R, Nkolola JP, Patel S, Ventura JD, Verrington K, Wan H, Pessaint L, Van Ry A, Blade K, Strasbaugh A, Cabus M, Brown R, Cook A, Zouantchangadou S, Teow E, Andersen H, Lewis MG, Cai Y, Chen B, Schmidt AG, Reeves RK, Baric RS, Lauffenburger DA, Alter G, Stoffels P, Mammen M, Van Hoof J, Schuitemaker H, Barouch DH. Single-shot Ad26 vaccine protects against SARS-CoV-2 in rhesus macaques. Nature. 2020 Oct;586(7830):583-588. doi: 10.1038/s41586-020-2607-z. Epub 2020 Jul 30. PMID: 32731257; PMCID: PMC7581548.

Tostanoski LH, Wegmann F, Martinot AJ, Loos C, McMahan K, Mercado NB, Yu J, Chan CN, Bondoc S, Starke CE, Nekorchuk M, Busman-Sahay K, Piedra-Mora C, Wrijil LM, Ducat S, Custers J, Atyeo C, Fischinger S, Burke JS, Feldman J, Hauser BM, Caradonna TM, Bondzie EA, Dagotto G, Gebre MS, Jacob-Dolan C, Lin Z, Mahrokhian SH, Nampanya F, Nityanandam R, Pessaint L, Porto M, Ali V, Benetiene D, Tevi K, Andersen H, Lewis MG, Schmidt AG, Lauffenburger DA, Alter G, Estes JD, Schuitemaker H, Zahn R, Barouch DH. Ad26 vaccine protects against SARS-CoV-2 severe clinical disease in hamsters. Nat Med. 2020 Sep 3. doi: 10.1038/s41591-020-1070-6. Epub ahead of print. PMID: 32884153. PMCID: PMC7671939.

Helgager J, Driver J, Hoffman S, Bi WL. Molecular Advances in Central Nervous System Mesenchymal Tumors. Surg Pathol Clin. 2020 Jun;13(2):291-303. doi: 10.1016/j.path.2020.02.002. PMID: 32389268.

Gupta S, Iorgulescu JB, Hoffman S, Catalino M, Bernstock JD, Chua M, Segar DJ, Fandino LB, Laws ER, Smith TR. The diagnosis and management of primary and iatrogenic soft tissue sarcomas of the sella. Pituitary. 2020 Oct;23(5):558-572. doi: 10.1007/s11102-020-01062-y. PMID: 32613388.

Hoffman SE, Al Abdulmohsen SA, Gupta S, Hauser BM, Meredith DM, Dunn IF, Bi WL. Translational Windows in Chordoma: A Target Appraisal. Front Neurol. 2020 Jul 8;11:657. doi: 10.3389/fneur.2020.00657. PMID: 32733369; PMCID: PMC7360834.

Howard TP, Roberts CWM. Partitioning of Chemotherapeutics into Nuclear Condensates-Opening the Door to New Approaches for Drug Development. Mol Cell. 2020 Aug 20;79(4):544-545. doi: 10.1016/j.molcel.2020.07.029. PMID: 32822580.

Howard TP, Oberlick EM, Rees MG, Arnoff TE, Pham MT, Brenan L, DoCarmo M, Hong AL, Kugener G, Chou HC, Drosos Y, Mathias KM, Ramos P, Seashore-Ludlow B, Giacomelli AO, Wang X, Freeman BB 3rd, Blankenship K, Hoffmann L, Tiv HL, Gokhale PC, Johannessen CM, Stewart EA, Schreiber SL, Hahn WC, Roberts CWM. Rhabdoid Tumors Are Sensitive to the Protein-Translation Inhibitor Homoharringtonine. Clin Cancer Res. 2020 Sep 15;26(18):4995-5006. doi: 10.1158/1078-0432.CCR-19-2717. Epub 2020 Jul 6. PMID: 32631955; PMCID: PMC7501142.

Chakraborty M, Hu S, Visness E, Del Giudice M, De Martino A, Bosia C, Sharp PA, Garg S. MicroRNAs organize intrinsic variation into stem cell states. Proc Natl Acad Sci U S A. 2020 Mar 24;117(12):6942-6950. doi: 10.1073/pnas.1920695117. Epub 2020 Mar 5. PMID: 32139605; PMCID: PMC7104302.

Ding J, Adiconis X, Simmons SK, Kowalczyk MS, Hession CC, Marjanovic ND, Hughes TK, Wadsworth MH, Burks T, Nguyen LT, Kwon JYH, Barak B, Ge W, Kedaigle AJ, Carroll S, Li S, Hacohen N, Rozenblatt-Rosen O, Shalek AK, Villani AC, Regev A, Levin JZ. Systematic comparison of single-cell and single-nucleus RNA-sequencing methods. Nat Biotechnol. 2020 Jun;38(6):737-746. doi: 10.1038/s41587-020-0465-8. Epub 2020 Apr 6. Erratum in: Nat Biotechnol. 2020 Apr 27;: PMID: 32341560; PMCID: PMC7289686.

Darrah PA, Zeppa JJ, Maiello P, Hackney JA, Wadsworth MH 2nd, Hughes TK, Pokkali S, Swanson PA 2nd, Grant NL, Rodgers MA, Kamath M, Causgrove CM, Laddy DJ, Bonavia A, Casimiro D, Lin PL, Klein E, White AG, Scanga CA, Shalek AK, Roederer M, Flynn JL, Seder RA. Prevention of tuberculosis in macaques after intravenous BCG immunization. Nature. 2020 Jan;577(7788):95-102. doi: 10.1038/s41586-019-1817-8. Epub 2020 Jan 1. PMID: 31894150; PMCID: PMC7015856.

Ziegler CGK, Allon SJ, Nyquist SK, Mbano IM, Miao VN, Tzouanas CN, Cao Y, Yousif AS, Bals J, Hauser BM, Feldman J, Muus C, Wadsworth MH 2nd, Kazer SW, Hughes TK, Doran B, Gatter GJ, Vukovic M, Taliaferro F, Mead BE, Guo Z, Wang JP, Gras D, Plaisant M, Ansari M, Angelidis I, Adler H, Sucre JMS, Taylor CJ, Lin B, Waghray A, Mitsialis V, Dwyer DF, Buchheit KM, Boyce JA, Barrett NA, Laidlaw TM, Carroll SL, Colonna L, Tkachev V, Peterson CW, Yu A, Zheng HB, Gideon HP, Winchell CG, Lin PL, Bingle CD, Snapper SB, Kropski JA, Theis FJ, Schiller HB, Zaragosi LE, Barbry P, Leslie A, Kiem HP, Flynn JL, Fortune SM, Berger B, Finberg RW, Kean LS, Garber M, Schmidt AG, Lingwood D, Shalek AK, Ordovas-Montanes J; HCA Lung Biological Network. Electronic address: lung-network@humancellatlas.org; HCA Lung Biological Network. SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues. Cell. 2020 May 28;181(5):1016-1035.e19. doi: 10.1016/j.cell.2020.04.035. Epub 2020 Apr 27. PMID: 32413319; PMCID: PMC7252096.

Sana MK, Hussain ZM, Shah PA, Maqsood MH. Artificial intelligence in celiac disease. Comput Biol Med. 2020 Sep 17;125:103996. doi: 10.1016/j.compbiomed.2020.103996. Epub ahead of print. PMID: 32979542.

Kalinich M, Kwan TT, Toner M, Haber DA, Maheswaran S. Quantitative Analysis of Circulating Tumor Cells Using RNA-Based Digital Scoring. Recent Results Cancer Res. 2020;215:77-88. doi: 10.1007/978-3-030-26439-0_4. PMID: 31605224.

Ebright RY, Lee S, Wittner BS, Niederhoffer KL, Nicholson BT, Bardia A, Truesdell S, Wiley DF, Wesley B, Li S, Mai A, Aceto N, Vincent-Jordan N, Szabolcs A, Chirn B, Kreuzer J, Comaills V, Kalinich M, Haas W, Ting DT, Toner M, Vasudevan S, Haber DA, Maheswaran S, Micalizzi DS. Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis. Science. 2020 Mar 27;367(6485):1468-1473. doi: 10.1126/science.aay0939. Epub 2020 Feb 6. PMID: 32029688.

Zlitni S, Bishara A, Moss EL, Tkachenko E, Kang JB, Culver RN, Andermann TM, Weng Z, Wood C, Handy C, Ji HP, Batzoglou S, Bhatt AS. Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale. Genome Med. 2020 May 29;12(1):50. doi: 10.1186/s13073-020-00747-0. PMID: 32471482; PMCID: PMC7260799.

Lemieux M, Colazo JM, Kienka T, Zhakyp A. A Basis to Be Here: Stories from International Graduate Students in the United States. Cell Rep Med. 2020 Sep 22;1(6):100100. doi: 10.1016/j.xcrm.2020.100100. PMID: 32984857; PMCID: PMC7508047.

Kong E, Beshears J, Laibson D, Madrian B, Volpp K, Loewenstein G, Kolstad J, Choi JJ. Do physician incentives increase patient medication adherence? Health Serv Res. 2020 Aug;55(4):503-511. doi: 10.1111/1475-6773.13322. PMID: 32700389; PMCID: PMC7376007.

Sakabe S, Hartnett JN, Ngo N, Goba A, Momoh M, Sandi JD, Kanneh L, Cubitt B, Garcia SD, Ware BC, Kotliar D, Robles-Sikisaka R, Gangavarapu K, Branco LM, Eromon P, Odia I, Ogbaini-Emovon E, Folarin O, Okogbenin S, Okokhere PO, Happi C, Sabeti PC, Andersen KG, Garry RF, de la Torre JC, Grant DS, Schieffelin JS, Oldstone MBA, Sullivan BM. Identification of Common CD8+ T Cell Epitopes from Lassa Fever Survivors in Nigeria and Sierra Leone. J Virol. 2020 Jun 1;94(12):e00153-20. doi: 10.1128/JVI.00153-20. PMID: 32269122; PMCID: PMC7307091.

Sullivan BM, Sakabe S, Hartnett JN, Ngo N, Goba A, Momoh M, Demby Sandi J, Kanneh L, Cubitt B, Garcia SD, Ware BC, Kotliar D, Robles-Sikisaka R, Gangavarapu K, Branco L, Eromon P, Odia I, Ogbaini-Emovon E, Folarin O, Okogbenin S, Okokhere PO, Happi C, de la Torre JC, Sabeti PC, Andersen KG, Garry RF, Grant DS, Schieffelin JS, Oldstone MBA. High crossreactivity of human T cell responses between Lassa virus lineages. PLoS Pathog. 2020 Mar 6;16(3):e1008352. doi: 10.1371/journal.ppat.1008352. PMID: 32142546; PMCID: PMC7080273.

Keshavarz-Motamed Z, Khodaei S, Rikhtegar Nezami F, Amrute JM, Lee SJ, Brown J, Ben-Assa E, Garcia Camarero T, Ruano Calvo J, Sellers S, Blanke P, Leipsic J, de la Torre Hernandez JM, Edelman ER. Mixed Valvular Disease Following Transcatheter Aortic Valve Replacement: Quantification and Systematic Differentiation Using Clinical Measurements and Image-Based Patient-Specific In Silico Modeling. J Am Heart Assoc. 2020 Mar 3;9(5):e015063. doi: 10.1161/JAHA.119.015063. Epub 2020 Feb 28. PMID: 32106747; PMCID: PMC7335548.

Scimone ML, Atabay KD, Fincher CT, Bonneau AR, Li DJ, Reddien PW. Muscle and neuronal guidepost-like cells facilitate planarian visual system regeneration. Science. 2020 Jun 26;368(6498):eaba3203. doi: 10.1126/science.aba3203. PMID: 32586989.

Lite TV, Grant RA, Nocedal I, Littlehale ML, Guo MS, Laub MT. Uncovering the basis of protein-protein interaction specificity with a combinatorially complete library. Elife. 2020 Oct 27;9:e60924. doi: 10.7554/eLife.60924. Epub ahead of print. PMID: 33107822.

Walker RG, Barrandon O, Poggioli T, Dagdeviren S, Carroll SH, Mills MJ, Mendello KR, Gomez Y, Loffredo FS, Pancoast JR, Macias-Trevino C, Marts C, LeClair KB, Noh HL, Kim T, Banks AS, Kim JK, Cohen DE, Wagers AJ, Melton DA, Lee RT. Exogenous GDF11, but not GDF8, reduces body weight and improves glucose homeostasis in mice. Sci Rep. 2020 Mar 12;10(1):4561. doi: 10.1038/s41598-020-61443-y. PMID: 32165710; PMCID: PMC7067781.

Manelin EB. Health Care Quality Improvement and the Ambiguous Commodity of Care. Med Anthropol Q. 2020 Aug 7. doi: 10.1111/maq.12608. Epub ahead of print. PMID: 32767465.

Stephanie L. McNamara, Yevgeny Brudno, Alex B. Miller, Hyun Oki Ham, Michael Aizenberg, Elliot L. Chaikof, and David J. Mooney. Regenerating Antithrombotic Surfaces through Nucleic Acid Displacement ACS Biomaterials Science & Engineering 2020 6 (4), 2159-2166 DOI: 10.1021/acsbiomaterials.0c00038

Messinger CJ, Lipsitch M, Bateman BT, He M, Huybrechts KF, MacDonald S, Mogun H, Mott K, Hernández-Díaz S. Association Between Congenital Cytomegalovirus and the Prevalence at Birth of Microcephaly in the United States. JAMA Pediatr. 2020 Sep 14:e203009. doi: 10.1001/jamapediatrics.2020.3009. Epub ahead of print. PMID: 32926077; PMCID: PMC7490747.

Kim HR, Malik AN, Mikhael JG, Bech P, Tsutsui-Kimura I, Sun F, Zhang Y, Li Y, Watabe-Uchida M, Gershman SJ, Uchida N. A Unified Framework for Dopamine Signals across Timescales. Cell. 2020 Nov 25:S0092-8674(20)31530-0. doi: 10.1016/j.cell.2020.11.013. Epub ahead of print. PMID: 33248024.

Nakatsuka N, Luisi P, Motti JMB, Salemme M, Santiago F, D'Angelo Del Campo MD, Vecchi RJ, Espinosa-Parrilla Y, Prieto A, Adamski N, Lawson AM, Harper TK, Culleton BJ, Kennett DJ, Lalueza-Fox C, Mallick S, Rohland N, Guichón RA, Cabana GS, Nores R, Reich D. Ancient genomes in South Patagonia reveal population movements associated with technological shifts and geography. Nat Commun. 2020 Aug 3;11(1):3868. doi: 10.1038/s41467-020-17656-w. PMID: 32747648; PMCID: PMC7400565.

Nakatsuka N, Harney É, Mallick S, Mah M, Patterson N, Reich D. ContamLD: estimation of ancient nuclear DNA contamination using breakdown of linkage disequilibrium. Genome Biol. 2020 Aug 10;21(1):199. doi: 10.1186/s13059-020-02111-2. PMID: 32778142; PMCID: PMC7418405.

Nakatsuka N, Patterson N, Patsopoulos NA, Altemose N, Tandon A, Beecham AH, McCauley JL, Isobe N, Hauser S, De Jager PL, Hafler DA, Oksenberg JR, Reich D. Two genetic variants explain the association of European ancestry with multiple sclerosis risk in African-Americans. Sci Rep. 2020 Oct 9;10(1):16902. doi: 10.1038/s41598-020-74035-7. PMID: 33037294.

Bongers JL, Nakatsuka N, O'Shea C, Harper TK, Tantaleán H, Stanish C, Fehren-Schmitz L. Integration of ancient DNA with transdisciplinary dataset finds strong support for Inca resettlement in the south Peruvian coast. Proc Natl Acad Sci U S A. 2020 Aug 4;117(31):18359-18368. doi: 10.1073/pnas.2005965117. Epub 2020 Jul 13. PMID: 32661160; PMCID: PMC7414190.

Nakatsuka N, Lazaridis I, Barbieri C, Skoglund P, Rohland N, Mallick S, Posth C, Harkins-Kinkaid K, Ferry M, Harney É, Michel M, Stewardson K, Novak-Forst J, Capriles JM, Durruty MA, Álvarez KA, Beresford-Jones D, Burger R, Cadwallader L, Fujita R, Isla J, Lau G, Aguirre CL, LeBlanc S, Maldonado SC, Meddens F, Messineo PG, Culleton BJ, Harper TK, Quilter J, Politis G, Rademaker K, Reindel M, Rivera M, Salazar L, Sandoval JR, Santoro CM, Scheifler N, Standen V, Barreto MI, Espinoza IF, Tomasto-Cagigao E, Valverde G, Kennett DJ, Cooper A, Krause J, Haak W, Llamas B, Reich D, Fehren-Schmitz L. A Paleogenomic Reconstruction of the Deep Population History of the Andes. Cell. 2020 May 28;181(5):1131-1145.e21. doi: 10.1016/j.cell.2020.04.015. Epub 2020 May 7. PMID: 32386546; PMCID: PMC7304944.

Nader JH, Neel DV, Shulman DS, Ma C, Bourgeois F, DuBois SG. Landscape of phase 1 clinical trials for minors with cancer in the United States. Pediatr Blood Cancer. 2020 Sep 4:e28694. doi: 10.1002/pbc.28694. Epub ahead of print. PMID: 32886429.

Neel DV, Shulman DS, Ma C, Bourgeois F, DuBois SG. Sponsorship of oncology clinical trials in the United States according to age of eligibility. Cancer Med. 2020 Jul;9(13):4495-4500. doi: 10.1002/cam4.3083. Epub 2020 Apr 29. PMID: 32351000; PMCID: PMC7333829.

Lakshmanan A, Jin Z, Nety SP, Sawyer DP, Lee-Gosselin A, Malounda D, Swift MB, Maresca D, Shapiro MG. Acoustic biosensors for ultrasound imaging of enzyme activity. Nat Chem Biol. 2020 Sep;16(9):988-996. doi: 10.1038/s41589-020-0591-0. Epub 2020 Jul 13. Erratum in: Nat Chem Biol. 2020 Jul 23;: PMID: 32661379.

Lakshmanan A, Jin Z, Nety SP, Sawyer DP, Lee-Gosselin A, Malounda D, Swift MB, Maresca D, Shapiro MG. Publisher Correction: Acoustic biosensors for ultrasound imaging of enzyme activity. Nat Chem Biol. 2020 Sep;16(9):1035. doi: 10.1038/s41589-020-0630-x. Erratum for: Nat Chem Biol. 2020 Sep;16(9):988-996. PMID: 32704181.

Cathcart AM, Bird GH, Wales TE, Herce HD, Harvey EP, Hauseman ZJ, Newman CE, Adhikary U, Prew MS, Oo T, Lee S, Engen JR, Walensky LD. Targeting a helix-in-groove interaction between E1 and E2 blocks ubiquitin transfer. Nat Chem Biol. 2020 Aug 17. doi: 10.1038/s41589-020-0625-7. Epub ahead of print. PMID: 32807965.

Hauseman ZJ, Harvey EP, Newman CE, Wales TE, Bucci JC, Mintseris J, Schweppe DK, David L, Fan L, Cohen DT, Herce HD, Mourtada R, Ben-Nun Y, Bloch NB, Hansen SB, Wu H, Gygi SP, Engen JR, Walensky LD. Homogeneous Oligomers of Pro-apoptotic BAX Reveal Structural Determinants of Mitochondrial Membrane Permeabilization. Mol Cell. 2020 Jul 2;79(1):68-83.e7. doi: 10.1016/j.molcel.2020.05.029. Epub 2020 Jun 12. PMID: 32533918.

Harvey EP, Hauseman ZJ, Cohen DT, Rettenmaier TJ, Lee S, Huhn AJ, Wales TE, Seo HS, Luccarelli J, Newman CE, Guerra RM, Bird GH, Dhe-Paganon S, Engen JR, Wells JA, Walensky LD. Identification of a Covalent Molecular Inhibitor of Anti-apoptotic BFL-1 by Disulfide Tethering. Cell Chem Biol. 2020 Jun 18;27(6):647-656.e6. doi: 10.1016/j.chembiol.2020.04.004. Epub 2020 May 14. PMID: 32413285; PMCID: PMC7405809.

Du D, Neuberger A, Orr MW, Newman CE, Hsu PC, Samsudin F, Szewczak-Harris A, Ramos LM, Debela M, Khalid S, Storz G, Luisi BF. Interactions of a Bacterial RND Transporter with a Transmembrane Small Protein in a Lipid Environment. Structure. 2020 Jun 2;28(6):625-634.e6. doi: 10.1016/j.str.2020.03.013. Epub 2020 Apr 28. PMID: 32348749; PMCID: PMC7267776.

Ben-Nun Y, Seo HS, Harvey EP, Hauseman ZJ, Wales TE, Newman CE, Cathcart AM, Engen JR, Dhe-Paganon S, Walensky LD. Identification of a Structural Determinant for Selective Targeting of HDMX. Structure. 2020 Jul 7;28(7):847-857.e5. doi: 10.1016/j.str.2020.04.011. Epub 2020 Apr 30. PMID: 32359398; PMCID: PMC7427690.

Dolcini J, Wu H, Nwanaji-Enwerem JC, Kiomourtozlogu MA, Cayir A, Sanchez-Guerra M, Vokonas P, Schwarz J, Baccarelli AA. Mitochondria and aging in older individuals: an analysis of DNA methylation age metrics, leukocyte telomere length, and mitochondrial DNA copy number in the VA normative aging study. Aging (Albany NY). 2020 Feb 2;12(3):2070-2083. doi: 10.18632/aging.102722. Epub 2020 Feb 2. PMID: 32009007; PMCID: PMC7041780.

Nwanaji-Enwerem JC, Jenkins TG, Colicino E, Cardenas A, Baccarelli AA, Boyer EW. Serum dioxin levels and sperm DNA methylation age: Findings in Vietnam war veterans exposed to Agent Orange. Reprod Toxicol. 2020 Jun 6;96:27-35. doi: 10.1016/j.reprotox.2020.06.004. Epub ahead of print. PMID: 32522586.

Nwanaji-Enwerem JC, Colicino E. DNA Methylation-Based Biomarkers of Environmental Exposures for Human Population Studies. Curr Environ Health Rep. 2020 Jun;7(2):121-128. doi: 10.1007/s40572-020-00269-2. PMID: 32062850.

Nwanaji-Enwerem JC, Landry A. Bedside Point-of-Care Ultrasound of an Adult with Diffuse Intermittent Abdominal Pain. Acute Med. 2020;19(1):49-51. PMID: 32226958.

Nwanaji-Enwerem JC, Allen JG, Beamer PI. Another invisible enemy indoors: COVID-19, human health, the home, and United States indoor air policy. J Expo Sci Environ Epidemiol. 2020 Sep;30(5):773-775. doi: 10.1038/s41370-020-0247-x. Epub 2020 Jul 8. PMID: 32641763; PMCID: PMC7341994.

Nwanaji-Enwerem JC, Colicino E, Specht AJ, Gao X, Wang C, Vokonas P, Weisskopf MG, Boyer EW, Baccarelli AA, Schwartz J. Individual species and cumulative mixture relationships of 24-hour urine metal concentrations with DNA methylation age variables in older men. Environ Res. 2020 Jul;186:109573. doi: 10.1016/j.envres.2020.109573. Epub 2020 Apr 25. PMID: 32361261; PMCID: PMC7363532.

Nwanaji-Enwerem JC, Nwanaji-Enwerem U, Van Der Laan L, Galazka JM, Redeker NS, Cardenas A. A Longitudinal Epigenetic Aging and Leukocyte Analysis of Simulated Space Travel: The Mars-500 Mission. Cell Rep. 2020 Nov 10:108406. doi: 10.1016/j.celrep.2020.108406. Epub ahead of print. PMID: 33242403.

Orozco JM, Krawczyk PA, Scaria SM, Cangelosi AL, Chan SH, Kunchok T, Lewis CA, Sabatini DM. Dihydroxyacetone phosphate signals glucose availability to mTORC1. Nat Metab. 2020 Jul 27. doi: 10.1038/s42255-020-0250-5. Epub ahead of print. PMID: 32719541.

Do T, Page JE, Walker S. Uncovering the activities, biological roles, and regulation of bacterial cell wall hydrolases and tailoring enzymes. J Biol Chem. 2020 Mar 6;295(10):3347-3361. doi: 10.1074/jbc.REV119.010155. Epub 2020 Jan 23. PMID: 31974163; PMCID: PMC7062177.

Bowling S, Sritharan D, Osorio FG, Nguyen M, Cheung P, Rodriguez-Fraticelli A, Patel S, Yuan WC, Fujiwara Y, Li BE, Orkin SH, Hormoz S, Camargo FD. An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells. Cell. 2020 Jun 11;181(6):1410-1422.e27. doi: 10.1016/j.cell.2020.04.048. Epub 2020 May 14. Erratum in: Cell. 2020 Jun 25;181(7):1693-1694. PMID: 32413320; PMCID: PMC7529102.

Bowling S, Sritharan D, Osorio FG, Nguyen M, Cheung P, Rodriguez-Fraticelli A, Patel S, Yuan WC, Fujiwara Y, Li BE, Orkin SH, Hormoz S, Camargo FD. An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells. Cell. 2020 Jun 25;181(7):1693-1694. doi: 10.1016/j.cell.2020.06.018. Erratum for: Cell. 2020 Jun 11;181(6):1410-1422.e27. PMID: 32589959; PMCID: PMC7530571.

Yu C, Wang L, Rowe RG, Han A, Ji W, McMahon C, Baier AS, Huang YC, Marion W, Pearson DS, Kruse AC, Daley GQ, Wu H, Sliz P. A nanobody targeting the LIN28:let-7 interaction fragment of TUT4 blocks uridylation of let-7. Proc Natl Acad Sci U S A. 2020 Mar 3;117(9):4653-4663. doi: 10.1073/pnas.1919409117. Epub 2020 Feb 14. PMID: 32060122; PMCID: PMC7060709.

Arizti-Sanz J, Freije CA, Stanton AC, Petros BA, Boehm CK, Siddiqui S, Shaw BM, Adams G, Kosoko-Thoroddsen TF, Kemball ME, Uwanibe JN, Ajogbasile FV, Eromon PE, Gross R, Wronka L, Caviness K, Hensley LE, Bergman NH, MacInnis BL, Happi CT, Lemieux JE, Sabeti PC, Myhrvold C. Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2. Nat Commun. 2020 Nov 20;11(1):5921. doi: 10.1038/s41467-020-19097-x. PMID: 33219225.

Miller DG, Pierson L, Doernberg S. The Role of Medical Students During the COVID-19 Pandemic. Ann Intern Med. 2020 Jul 21;173(2):145-146. doi: 10.7326/M20-1281. Epub 2020 Apr 7. PMID: 32259194; PMCID: PMC7151405.

Pierson L, Gibert S, Berkman B, Danis M, Millum J. Allocation of scarce biospecimens for use in research. J Med Ethics. 2020 Mar 27:medethics-2019-105766. doi: 10.1136/medethics-2019-105766. Epub ahead of print. PMID: 32220871.

Tyan K, Levin A, Avalos-Pacheco A, Plana D, Rand EA, Yang H, Maliszewski LE, Chylek LA, Atta L, Tye MA, Carmack MM, Oglesby NS, Burgin S, Yu SH, LeBoeuf NR, Kemp JM. Considerations for the Selection and Use of Disinfectants Against SARS-CoV-2 in a Health Care Setting. Open Forum Infect Dis. 2020 Aug 31;7(9):ofaa396. doi: 10.1093/ofid/ofaa396. PMID: 32989420; PMCID: PMC7499694.

Mostaghimi A,* Antonini MJ,* Plana D,* Anderson PD, Beller B, Boyer EW, Fannin A, Freake J, Oakley R, Sinha MS, Smith L, Van C, Yang H, Sorger PK, LeBoeuf NR, Yu SH. Regulatory and Safety Considerations in Deploying a Locally Fabricated, Reusable Face Shield in a Hospital Responding to the COVID-19 Pandemic. Med (N Y). 2020 Jun 19. doi: 10.1016/j.medj.2020.06.003. Epub ahead of print. PMID: 32838357; PMCID: PMC7304404.

Palmer AC*, Plana D*, Gao H*, Korn JM, Yang G, Green J, Zhang X, Velazquez R, McLaughlin ME, Ruddy DA, Kowal C, Muszynski J, Bullock C, Rivera S, Rakiec DP, Elliott G, Fordjour P, Meyer R, Loo A, Kurth E, Engelman JA, Bitter H, Sellers WR, Williams JA, Sorger PK. A Proof of Concept for Biomarker-Guided Targeted Therapy against Ovarian Cancer Based on Patient-Derived Tumor Xenografts. Cancer Res. 2020 Oct 1;80(19):4278-4287. doi: 10.1158/0008-5472.CAN-19-3850. Epub 2020 Aug 3. PMID: 32747364; PMCID: PMC7541581.

Christodoulou C, Spencer JA, Yeh SA, Turcotte R, Kokkaliaris KD, Panero R, Ramos A, Guo G, Seyedhassantehrani N, Esipova TV, Vinogradov SA, Rudzinskas S, Zhang Y, Perkins AS, Orkin SH, Calogero RA, Schroeder T, Lin CP, Camargo FD. Live-animal imaging of native haematopoietic stem and progenitor cells. Nature. 2020 Feb;578(7794):278-283. doi: 10.1038/s41586-020-1971-z. Epub 2020 Feb 5. PMID: 32025033; PMCID: PMC7021587.

W Kim D, Raoof S, Lamba N, Lee G, S Bitterman D, R Mahal A, N Sanford N, B Lam M, J Mamon H. Definitive re-irradiation of locally recurrent esophageal cancer after trimodality therapy in patients with a poor performance status. Mol Clin Oncol. 2020 Jul;13(1):27-32. doi: 10.3892/mco.2020.2044. Epub 2020 May 11. PMID: 32454972; PMCID: PMC7241232.

Rencsok EM, Bazzi LA, McKay RR, Huang FW, Friedant A, Vinson J, Peisch S, Zarif JC, Simmons S, Hawthorne K, Villanti P, Kantoff PW, Heath E, George DJ, Mucci LA. Diversity of Enrollment in Prostate Cancer Clinical Trials: Current Status and Future Directions. Cancer Epidemiol Biomarkers Prev. 2020 Jul;29(7):1374-1380. doi: 10.1158/1055-9965.EPI-19-1616. Epub 2020 Jun 5. PMID: 32503813; PMCID: PMC7334076.

Huang AY, Li P, Rodin RE, Kim SN, Dou Y, Kenny CJ, Akula SK, Hodge RD, Bakken TE, Miller JA, Lein ES, Park PJ, Lee EA, Walsh CA. Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain. Proc Natl Acad Sci U S A. 2020 Jun 23;117(25):13886-13895. doi: 10.1073/pnas.2006163117. Epub 2020 Jun 10. PMID: 32522880; PMCID: PMC7322034.

Dou Y, Kwon M, Rodin RE, Cortés-Ciriano I, Doan R, Luquette LJ, Galor A, Bohrson C, Walsh CA, Park PJ. Accurate detection of mosaic variants in sequencing data without matched controls. Nat Biotechnol. 2020 Mar;38(3):314-319. doi: 10.1038/s41587-019-0368-8. Epub 2020 Jan 6. PMID: 31907404; PMCID: PMC7065972.

Ma KC, Mortimer TD, Hicks AL, Wheeler NE, Sánchez-Busó L, Golparian D, Taiaroa G, Rubin DHF, Wang Y, Williamson DA, Unemo M, Harris SR, Grad YH. Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae. Nat Commun. 2020 Aug 17;11(1):4126. doi: 10.1038/s41467-020-17980-1. PMID: 32807804; PMCID: PMC7431566.

Palace SG, Wang Y, Rubin DH, Welsh MA, Mortimer TD, Cole K, Eyre DW, Walker S, Grad YH. RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates. Elife. 2020 Feb 3;9:e51407. doi: 10.7554/eLife.51407. PMID: 32011233; PMCID: PMC7012608.

Rubin DHF, Ross JDC, Grad YH. The frontiers of addressing antibiotic resistance in Neisseria gonorrhoeae. Transl Res. 2020 Jun;220:122-137. doi: 10.1016/j.trsl.2020.02.002. Epub 2020 Feb 29. PMID: 32119845; PMCID: PMC7293957.

Low DM, Rumker L, Talkar T, Torous J, Cecchi G, Ghosh SS. Natural Language Processing Reveals Vulnerable Mental Health Support Groups and Heightened Health Anxiety on Reddit During COVID-19: Observational Study. J Med Internet Res. 2020 Oct 12;22(10):e22635. doi: 10.2196/22635. PMID: 32936777.

Muema DM, Mthembu M, Schiff AE, Singh U, Corleis B, Chen D, Bassett T, Rasehlo SS, Nyamande K, Khan DF, Maharaj P, Mitha M, Suleman M, Mhlane Z, Naidoo T, Ramjit D, Karim F, Kwon DS, Ndung'u T, Wong EB. Contrasting Inflammatory Signatures in Peripheral Blood and Bronchoalveolar Cells Reveal Compartment-Specific Effects of HIV Infection. Front Immunol. 2020 May 19;11:864. doi: 10.3389/fimmu.2020.00864. PMID: 32508817; PMCID: PMC7248324.

Oberfeld B, Achanta A, Carpenter K, Chen P, Gilette NM, Langat P, Said JT, Schiff AE, Zhou AS, Barczak AK, Pillai S. SnapShot: COVID-19. Cell. 2020 May 14;181(4):954-954.e1. doi: 10.1016/j.cell.2020.04.013. Epub 2020 Apr 30. PMID: 32413300; PMCID: PMC7190493.

Słabicki M, Kozicka Z, Petzold G, Li YD, Manojkumar M, Bunker RD, Donovan KA, Sievers QL, Koeppel J, Suchyta D, Sperling AS, Fink EC, Gasser JA, Wang LR, Corsello SM, Sellar RS, Jan M, Gillingham D, Scholl C, Fröhling S, Golub TR, Fischer ES, Thomä NH, Ebert BL. The CDK inhibitor CR8 acts as a molecular glue degrader that depletes cyclin K. Nature. 2020 Sep;585(7824):293-297. doi: 10.1038/s41586-020-2374-x. Epub 2020 Jun 3. PMID: 32494016; PMCID: PMC7486275.

Starkweather CK, Choi BD, Alvarez-Breckenridge C, Brastianos PK, Oh K, Wang N, Shih H, Nahed BV. Initial Approach to the Patient with Multiple Newly Diagnosed Brain Metastases. Neurosurg Clin N Am. 2020 Oct;31(4):505-513. doi: 10.1016/j.nec.2020.05.002. PMID: 32921347.

Dabney W, Kurth-Nelson Z, Uchida N, Starkweather CK, Hassabis D, Munos R, Botvinick M. A distributional code for value in dopamine-based reinforcement learning. Nature. 2020 Jan;577(7792):671-675. doi: 10.1038/s41586-019-1924-6. Epub 2020 Jan 15. PMID: 31942076; PMCID: PMC7476215.

Starkweather CK, Uchida N. Dopamine signals as temporal difference errors: recent advances. Curr Opin Neurobiol. 2020 Nov 10;67:95-105. doi: 10.1016/j.conb.2020.08.014. Epub ahead of print. PMID: 33186815.

Saeedi Saravi SS, Eroglu E, Waldeck-Weiermair M, Sorrentino A, Steinhorn B, Belousov V, Michel T. Differential endothelial signaling responses elicited by chemogenetic H2O2 synthesis. Redox Biol. 2020 Sep;36:101605. doi: 10.1016/j.redox.2020.101605. Epub 2020 Jun 16. PMID: 32590330; PMCID: PMC7322171.

Kodani A, Kenny C, Lai A, Gonzalez DM, Stronge E, Sejourne GM, Isacco L, Partlow JN, O'Donnell A, McWalter K, Byrne AB, Barkovich AJ, Yang E, Hill RS, Gawlinski P, Wiszniewski W, Cohen JS, Fatemi SA, Baranano KW, Sahin M, Vossler DG, Yuskaitis CJ, Walsh CA. Posterior Neocortex-Specific Regulation of Neuronal Migration by CEP85L Identifies Maternal Centriole-Dependent Activation of CDK5. Neuron. 2020 Apr 22;106(2):246-255.e6. doi: 10.1016/j.neuron.2020.01.030. Epub 2020 Feb 24. PMID: 32097629; PMCID: PMC7255387.

Su MY, Das S. Expansion of asynchronous teledermatology during the COVID-19 pandemic. J Am Acad Dermatol. 2020 Aug 18:S0190-9622(20)32446-4. doi: 10.1016/j.jaad.2020.08.054. Epub ahead of print. PMID: 32822793; PMCID: PMC7434450

Su MY, Lilly E, Yu J, Das S. Asynchronous teledermatology in medical education: Lessons from the COVID-19 pandemic. J Am Acad Dermatol. 2020 Sep;83(3):e267-e268. doi: 10.1016/j.jaad.2020.06.033. Epub 2020 Jun 14. PMID: 32553635; PMCID: PMC7293835.

Eisen TJ, Eichhorn SW, Subtelny AO, Lin KS, McGeary SE, Gupta S, Bartel DP. The Dynamics of Cytoplasmic mRNA Metabolism. Mol Cell. 2020 Feb 20;77(4):786-799.e10. doi: 10.1016/j.molcel.2019.12.005. Epub 2020 Jan 2. PMID: 31902669; PMCID: PMC7265681.

Eisen TJ, Eichhorn SW, Subtelny AO, Bartel DP. MicroRNAs Cause Accelerated Decay of Short-Tailed Target mRNAs. Mol Cell. 2020 Feb 20;77(4):775-785.e8. doi: 10.1016/j.molcel.2019.12.004. Epub 2020 Jan 2. PMID: 31902668; PMCID: PMC7096130.

Peterson QP, Veres A, Chen L, Slama MQ, Kenty JHR, Hassoun S, Brown MR, Dou H, Duffy CD, Zhou Q, Matveyenko AV, Tyrberg B, Sörhede-Winzell M, Rorsman P, Melton DA. A method for the generation of human stem cell-derived alpha cells. Nat Commun. 2020 May 7;11(1):2241. doi: 10.1038/s41467-020-16049-3. PMID: 32382023; PMCID: PMC7205884.

Vigue, Dana. "Future Physicians During Physical Distancing- Medical Students' Roles During COVID-19." Harvard Medical Student Review. 10 May 2020. https://www.hmsreview.org/covid/future-physicians-during-physical-distancing

Liu Y, Hegarty S, Winter C, Wang F, He Z. Viral vectors for neuronal cell type-specific visualization and manipulations. Curr Opin Neurobiol. 2020 Aug;63:67-76. doi: 10.1016/j.conb.2020.03.011. Epub 2020 Apr 25. PMID: 32344323; PMCID: PMC7484153.

Choi S, Hachisuka J, Brett MA, Magee AR, Omori Y, Iqbal NU, Zhang D, DeLisle MM, Wolfson RL, Bai L, Santiago C, Gong S, Goulding M, Heintz N, Koerber HR, Ross SE, Ginty DD. Parallel ascending spinal pathways for affective touch and pain. Nature. 2020 Nov;587(7833):258-263. doi: 10.1038/s41586-020-2860-1. Epub 2020 Oct 28. PMID: 33116307; PMCID: PMC7666110.

Wong AY, Whited JL. Parallels between wound healing, epimorphic regeneration and solid tumors. Development. 2020 Jan 2;147(1):dev181636. doi: 10.1242/dev.181636. PMID: 31898582.

Wang K, Yaghi OK, Spallanzani RG, Chen X, Zemmour D, Lai N, Chiu IM, Benoist C, Mathis D. Neuronal, stromal, and T-regulatory cell crosstalk in murine skeletal muscle. Proc Natl Acad Sci U S A. 2020 Mar 10;117(10):5402-5408. doi: 10.1073/pnas.1922559117. Epub 2020 Feb 26. PMID: 32102913; PMCID: PMC7071852.

Reddy A, Bozi LHM, Yaghi OK, Mills EL, Xiao H, Nicholson HE, Paschini M, Paulo JA, Garrity R, Laznik-Bogoslavski D, Ferreira JCB, Carl CS, Sjøberg KA, Wojtaszewski JFP, Jeppesen JF, Kiens B, Gygi SP, Richter EA, Mathis D, Chouchani ET. pH-Gated Succinate Secretion Regulates Muscle Remodeling in Response to Exercise. Cell. 2020 Oct 1;183(1):62-75.e17. doi: 10.1016/j.cell.2020.08.039. Epub 2020 Sep 17. PMID: 32946811.

Thaventhiran JED, Lango Allen H, Burren OS, Rae W, Greene D, Staples E, Zhang Z, Farmery JHR, Simeoni I, Rivers E, Maimaris J, Penkett CJ, Stephens J, Deevi SVV, Sanchis-Juan A, Gleadall NS, Thomas MJ, Sargur RB, Gordins P, Baxendale HE, Brown M, Tuijnenburg P, Worth A, Hanson S, Linger RJ, Buckland MS, Rayner-Matthews PJ, Gilmour KC, Samarghitean C, Seneviratne SL, Sansom DM, Lynch AG, Megy K, Ellinghaus E, Ellinghaus D, Jorgensen SF, Karlsen TH, Stirrups KE, Cutler AJ, Kumararatne DS, Chandra A, Edgar JDM, Herwadkar A, Cooper N, Grigoriadou S, Huissoon AP, Goddard S, Jolles S, Schuetz C, Boschann F; Primary Immunodeficiency Consortium for the NIHR Bioresource, Lyons PA, Hurles ME, Savic S, Burns SO, Kuijpers TW, Turro E, Ouwehand WH, Thrasher AJ, Smith KGC. Whole-genome sequencing of a sporadic primary immunodeficiency cohort. Nature. 2020 Jul;583(7814):90-95. doi: 10.1038/s41586-020-2265-1. Epub 2020 May 6. Erratum in: Nature. 2020 Aug;584(7819):E2. PMID: 32499645; PMCID: PMC7334047.

Ziegler CGK, Allon SJ, Nyquist SK, Mbano IM, Miao VN, Tzouanas CN, Cao Y, Yousif AS, Bals J, Hauser BM, Feldman J, Muus C, Wadsworth MH 2nd, Kazer SW, Hughes TK, Doran B, Gatter GJ, Vukovic M, Taliaferro F, Mead BE, Guo Z, Wang JP, Gras D, Plaisant M, Ansari M, Angelidis I, Adler H, Sucre JMS, Taylor CJ, Lin B, Waghray A, Mitsialis V, Dwyer DF, Buchheit KM, Boyce JA, Barrett NA, Laidlaw TM, Carroll SL, Colonna L, Tkachev V, Peterson CW, Yu A, Zheng HB, Gideon HP, Winchell CG, Lin PL, Bingle CD, Snapper SB, Kropski JA, Theis FJ, Schiller HB, Zaragosi LE, Barbry P, Leslie A, Kiem HP, Flynn JL, Fortune SM, Berger B, Finberg RW, Kean LS, Garber M, Schmidt AG, Lingwood D, Shalek AK, Ordovas-Montanes J; HCA Lung Biological Network. Electronic address: lung-network@humancellatlas.org; HCA Lung Biological Network. SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues. Cell. 2020 May 28;181(5):1016-1035.e19. doi: 10.1016/j.cell.2020.04.035. Epub 2020 Apr 27. PMID: 32413319; PMCID: PMC7252096.

Kazer SW, Aicher TP, Muema DM, Carroll SL, Ordovas-Montanes J, Miao VN, Tu AA, Ziegler CGK, Nyquist SK, Wong EB, Ismail N, Dong M, Moodley A, Berger B, Love JC, Dong KL, Leslie A, Ndhlovu ZM, Ndung'u T, Walker BD, Shalek AK. Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection. Nat Med. 2020 Apr;26(4):511-518. doi: 10.1038/s41591-020-0799-2. Epub 2020 Mar 23. PMID: 32251406; PMCID: PMC7237067.

McBride MJ, Mashtalir N, Winter EB, Dao HT, Filipovski M, D'Avino AR, Seo HS, Umbreit NT, St Pierre R, Valencia AM, Qian K, Zullow HJ, Jaffe JD, Dhe-Paganon S, Muir TW, Kadoch C. The nucleosome acidic patch and H2A ubiquitination underlie mSWI/SNF recruitment in synovial sarcoma. Nat Struct Mol Biol. 2020 Sep;27(9):836-845. doi: 10.1038/s41594-020-0466-9. Epub 2020 Aug 3. PMID: 32747783.

 

2019

Abudayyeh OO, Gootenberg JS, Franklin B, Koob J, Kellner MJ, Ladha A, Joung J, Kirchgatterer P, Cox DBT, Zhang F. A cytosine deaminase for programmable single-base RNA editing. Science. 2019 Jul 26;365(6451):382-386. doi: 10.1126/science.aax7063. Epub 2019 Jul 11. PubMed PMID: 31296651.

Toepfer CN, Sharma A, Cicconet M, Garfinkel AC, Mücke M, Neyazi M, Willcox JAL, Agarwal R, Schmid M, Rao J, Ewoldt J, Pourquié O, Chopra A, Chen CS, Seidman JG, Seidman CE. SarcTrack. Circ Res. 2019 Apr 12;124(8):1172-1183. doi: 10.1161/CIRCRESAHA.118.314505. PubMed PMID: 30700234; PubMed Central PMCID: PMC6485312.

Zhang L, Zhang Y, Cai T, Ahuja Y, He Z, Ho YL, Beam A, Cho K, Carroll R, Denny J, Kohane I, Liao K, Cai T. Automated grouping of medical codes via multiview banded spectral clustering. J Biomed Inform. 2019 Dec;100:103322. doi: 10.1016/j.jbi.2019.103322. Epub 2019 Oct 28. PMID: 31672532; PMCID: PMC7261410.

Ng SR, Rideout WM 3rd, Akama-Garren EH, Bhutkar A, Mercer KL, Schenkel JM, Bronson RT, Jacks T. CRISPR-mediated modeling and functional validation of candidate tumor suppressor genes in small cell lung cancer. Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):513-521. doi: 10.1073/pnas.1821893117. Epub 2019 Dec 23. PMID: 31871154; PMCID: PMC6955235.

Bhashyam AR, Basilico M, Harris MB, Heng M. Reply to Letter to the Editor: Prescription Opioid Type and the Likelihood of Prolonged Opioid Use After Orthopaedic Surgery. J Am Acad Orthop Surg. 2019 Apr 16. doi: 10.5435/JAAOS-D-19-00114. [Epub ahead of print] PubMed PMID: 31008876

Schwartz AL, Basilico MF, Friedman JL. Lactates and Local Knowledge - A Parable of Teamwork. N Engl J Med. 2019 Apr 11;380(15):1392-1393. doi: 10.1056/NEJMp1815228. PubMed PMID: 30970185.

Bhashyam AR, Basilico M, Weaver MJ, Harris MB, Heng M. Using Historical Variation in Opioid Prescribing Immediately After Fracture Surgery to Guide Maximum Initial Prescriptions. J Orthop Trauma. 2019 Apr;33(4):e131-e136. doi: 10.1097/BOT.0000000000001392. PubMed PMID: 30570619; PubMed Central PMCID: PMC6599458.

Basilico M, Bhashyam AR, Harris MB, Heng M. Prescription Opioid Type and the Likelihood of Prolonged Opioid Use After Orthopaedic Surgery. J Am Acad Orthop Surg. 2019 May 1;27(9):e423-e429. doi: 10.5435/JAAOS-D-17-00663. PubMed PMID:30289795; PubMed Central PMCID: PMC6590520.

Basilico, M.F., Bhashyam A.R., Harrington, E., & Heng, M.. Initial Opioid Supply Influences Long-Term Use and Doctor Shopping: An Instrumental Variables Approach. Journal of the American College of Surgeons. 2018, Oct; 227(4): S151-S152

Basilico, M.F., Bhashyam A.R., Heng M.. Racial Bias in Initial Opioid Prescribing for Orthopaedic Trauma Patients. Journal of the
American College of Surgeons. 2018, Oct; 227(4): S160

Cote DJ, Bever AM, Wilson KM, Smith TR, Smith-Warner SA, Stampfer MJ. A prospective study of tea and coffee intake and risk of glioma. Int J Cancer. 2019 Jul 15. doi: 10.1002/ijc.32574. [Epub ahead of print] PubMed PMID: 31304976

Twomey EC, Ji Z, Wales TE, Bodnar NO, Ficarro SB, Marto JA, Engen JR, Rapoport TA. Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding. Science. 2019 Aug 2;365(6452). pii: eaax1033. doi: 10.1126/science.aax1033. Epub 2019 Jun 27. PubMed PMID: 31249135.

Botelho, Alyssa. "The Insights of Radical Science in the CRISPR Gene-Editing Era: A History of Science for the People and the Cambridge Recombinant DNA Controversy." Science as Culture (June 2019): 1-30. DOI: 10.1080/09505431.2019.1623190

Watanabe A, McCarthy KR, Kuraoka M, Schmidt AG, Adachi Y, Onodera T, Tonouchi  K, Caradonna TM, Bajic G, Song S, McGee CE, Sempowski GD, Feng F, Urick P, Kepler TB, Takahashi Y, Harrison SC, Kelsoe G. Antibodies to a Conserved Influenza Head  Interface Epitope Protect by an IgG Subtype-Dependent Mechanism. Cell. 2019 May 16;177(5):1124-1135.e16. doi: 10.1016/j.cell.2019.03.048. PubMed PMID: 31100267;  PubMed Central PMCID: PMC6825805.

Menotti M, Ambrogio C, Cheong TC, Pighi C, Mota I, Cassel SH, Compagno M, Wang Q, Dall'Olio R, Minero VG, Poggio T, Sharma GG, Patrucco E, Mastini C, Choudhari  R, Pich A, Zamo A, Piva R, Giliani S, Mologni L, Collings CK, Kadoch C, Gambacorti-Passerini C, Notarangelo LD, Anton IM, Voena C, Chiarle R. Wiskott-Aldrich syndrome protein (WASP) is a tumor suppressor in T cell lymphoma. Nat Med. 2019 Jan;25(1):130-140. doi: 10.1038/s41591-018-0262-9. Epub 2018 Dec 3. PubMed PMID: 30510251; PubMed Central PMCID: PMC6556382.

Michel BC, D'Avino AR, Cassel SH, Mashtalir N, McKenzie ZM, McBride MJ, Valencia AM, Zhou Q, Bocker M, Soares LMM, Pan J, Remillard DI, Lareau CA, Zullow HJ, Fortoul N, Gray NS, Bradner JE, Chan HM, Kadoch C. A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation. Nat Cell Biol. 2018 Dec;20(12):1410-1420. doi: 10.1038/s41556-018-0221-1. Epub 2018 Nov 5. PubMed PMID: 30397315; PubMed Central PMCID: PMC6698386.

Klim JR, Williams LA, Limone F, Guerra San Juan I, Davis-Dusenbery BN, Mordes DA, Burberry A, Steinbaugh MJ, Gamage KK, Kirchner R, Moccia R, Cassel SH, Chen K, Wainger BJ, Woolf CJ, Eggan K. ALS-implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair. Nat Neurosci. 2019 Feb;22(2):167-179. doi: 10.1038/s41593-018-0300-4. Epub 2019 Jan 14. PMID: 30643292; PMCID: PMC7153761.

Silva MA, Patel J, Kavouridis V, Gallerani T, Beers A, Chang K, Hoebel KV, Brown J, See AP, Gormley WB, Aziz-Sultan MA, Kalpathy-Cramer J, Arnaout O, Patel  NJ. Machine Learning Models can Detect Aneurysm Rupture and Identify Clinical Features Associated with Rupture. World Neurosurg. 2019 Nov;131:e46-e51. doi: 10.1016/j.wneu.2019.06.231. Epub 2019 Jul 9. PubMed PMID: 31295616.

Chang K, Beers AL, Bai HX, Brown JM, Ly KI, Li X, Senders JT, Kavouridis VK, Boaro A, Su C, Bi WL, Rapalino O, Liao W, Shen Q, Zhou H, Xiao B, Wang Y, Zhang PJ, Pinho MC, Wen PY, Batchelor TT, Boxerman JL, Arnaout O, Rosen BR, Gerstner ER, Yang L, Huang RY, Kalpathy-Cramer J. Automatic assessment of glioma burden: a deep learning algorithm for fully automated volumetric and bidimensional measurement. Neuro Oncol. 2019 Nov 4;21(11):1412-1422. doi: 10.1093/neuonc/noz106. PubMed PMID: 31190077.

Choudhery S, Chou SS, Chang K, Kalpathy-Cramer J, Lehman CD. Kinetic Analysis of Lesions Identified on a Rapid Abridged Multiphase (RAMP) Breast MRI Protocol. Acad Radiol. 2019 May 27. pii: S1076-6332(19)30222-3. doi: 10.1016/j.acra.2019.05.001. [Epub ahead of print] PubMed PMID: 31147233.

Coyner, A.S., Swan, R., Campbell, J.P., Ostmo, S., Brown, J.M., Kalpathy-Cramer, J., Kim, S.J., Jonas, K.E., Chan, R.P., Chiang, M.F. and Imaging and Informatics in Retinopathy of Prematurity Research Consortium (Chang, K.), 2019. Automated fundus image quality assessment in retinopathy of prematurity using deep convolutional neural networks. Ophthalmology Retina, 3(5), pp.444-450. DOI: 10.1016/j.oret.2019.01.015 PMID: 31044738

Chen, L., Madubuonwu, J., Pecos-Duarte, C., & Sommers, B. D. (2019, September 3). Medicaid Expansion in Texas: Economic & Employment Implications. The Commonwealth Fund.

Madubuonwu, J., Chen, L., & Sommers, B. D. (2019, September 27). Work Requirements in Kentucky Medicaid: A Policy in Limbo. The Commonwealth Fund. https://doi.org/10.26099/wm0z-p823

Ludwig LS, Lareau CA, Bao EL, Nandakumar SK, Muus C, Ulirsch JC, Chowdhary K,  Buenrostro JD, Mohandas N, An X, Aryee MJ, Regev A, Sankaran VG. Transcriptional  States and Chromatin Accessibility Underlying Human Erythropoiesis. Cell Rep. 2019 Jun 11;27(11):3228-3240.e7. doi: 10.1016/j.celrep.2019.05.046. PubMed PMID:  31189107; PubMed Central PMCID: PMC6579117.

Miller BC, Sen DR, Al Abosy R, Bi K, Virkud YV, LaFleur MW, Yates KB, Lako A, Felt K, Naik GS, Manos M, Gjini E, Kuchroo JR, Ishizuka JJ, Collier JL, Griffin GK, Maleri S, Comstock DEWeiss SA, Brown FD, Panda A, Zimmer MD, Manguso RT, Hodi FS, Rodig SJ, Sharpe AH, Haining WN. Subsets of exhausted CD8(+) T cells differentially mediate tumor control and respond to checkpoint blockade. Nat Immunol. 2019 Mar;20(3):326-336. doi: 10.1038/s41590-019-0312-6. Epub 2019 Feb 18. Erratum in: Nat Immunol. 2019 Oct 3;:. PubMed PMID: 30778252; PubMed Central  PMCID: PMC6673650.

Valencia AM, Collings CK, Dao HT, St Pierre R, Cheng YC, Huang J, Sun ZY, Seo HS, Mashtalir N, Comstock DE, Bolonduro O, Vangos NE, Yeoh ZC, Dornon MK, Hermawan C, Barrett L, Dhe-Paganon S, Woolf CJ, Muir TW, Kadoch C. Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling. Cell. 2019 Nov 27;179(6):1342-1356.e23. doi: 10.1016/j.cell.2019.10.044. Epub 2019 Nov 20. PMID: 31759698; PMCID: PMC7175411.

Miller BC, Sen DR, Al Abosy R, Bi K, Virkud YV, LaFleur MW, Yates KB, Lako A, Felt K, Naik GS, Manos M, Gjini E, Kuchroo JR, Ishizuka JJ, Collier JL, Griffin GK, Maleri S, Comstock DE, Weiss SA, Brown FD, Panda A, Zimmer MD, Manguso RT, Hodi FS, Rodig SJ, Sharpe AH, Haining WN. Author Correction: Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade. Nat Immunol. 2019 Nov;20(11):1556. doi: 10.1038/s41590-019-0528-5. Erratum for: Nat Immunol. 2019 Mar;20(3):326-336. PMID: 31582823; PMCID: PMC7461603.

Connor Y, Tekleab Y, Tekleab S, Nandakumar S, Bharat D, Sengupta S. A mathematical model of tumor-endothelial interactions in a 3D co-culture. Sci Rep. 2019 Jun 10;9(1):8429. doi: 10.1038/s41598-019-44713-2. PMID: 31182723; PMCID: PMC6557844.

Giantini Larsen AM, Cote DJ, Zaidi HA, Bi WL, Schmitt PJ, Iorgulescu JB, Miller MB, Smith TR, Lopes MB, Jane JA, Laws ER. Spindle cell oncocytoma of the pituitary gland. J Neurosurg. 2018 Oct 19:1-9. doi: 10.3171/2018.4.JNS18211. [Epub ahead of print] PubMed PMID: 30485213; PubMed Central PMCID: PMC6486883.

Cote DJ, Bever AM, Wilson KM, Smith TR, Smith-Warner SA, Stampfer MJ. A prospective study of tea and coffee intake and risk of glioma. Int J Cancer. 2019 Jul 15. doi: 10.1002/ijc.32574. [Epub ahead of print] PubMed PMID: 31304976

Riordan CP, Storey A, Cote DJ, Smith ER, Scott RM. Results of more than 20 years of follow-up in pediatric patients with moyamoya disease undergoing pial synangiosis. J Neurosurg Pediatr. 2019 Mar 1:1-7. doi: 10.3171/2019.1.PEDS18457. [Epub ahead of print] PubMed PMID: 30835683.

Cote DJ, Barnett I, Onnela JP, Smith TR. Digital Phenotyping in Patients with Spine Disease: A Novel Approach to Quantifying Mobility and Quality of Life. World Neurosurg. 2019 Jun;126:e241-e249. doi: 10.1016/j.wneu.2019.01.297. Epub 2019 Feb 22. PubMed PMID: 30797933; PubMed Central PMCID: PMC6706326.

Senders JT, Karhade AV, Cote DJ, Mehrtash A, Lamba N, DiRisio A, Muskens IS, Gormley WB, Smith TR, Broekman MLD, Arnaout O. Natural Language Processing for Automated Quantification of Brain Metastases Reported in Free-Text Radiology Reports. JCO Clin Cancer Inform. 2019 Apr;3:1-9. doi: 10.1200/CCI.18.00138. PubMed PMID: 31002562.

Rubin DB, Danish HH, Ali AB, Li K, LaRose S, Monk AD, Cote DJ, Spendley L, Kim AH, Robertson MS, Torre M, Smith TR, Izzy S, Jacobson CA, Lee JW, Vaitkevicius H. Neurological toxicities associated with chimeric antigen receptor T-cell therapy. Brain. 2019 May 1;142(5):1334-1348. doi: 10.1093/brain/awz053. PubMed PMID: 30891590.

Cote DJ, Dasenbrock HH, Gormley WB, Smith TR, Dunn IF. Adverse Events After Microvascular Decompression: A National Surgical Quality Improvement Program Analysis. World Neurosurg. 2019 Aug;128:e884-e894. doi: 10.1016/j.wneu.2019.05.022. Epub 2019 May 11. PubMed PMID: 31082546; PubMed Central PMCID: PMC6825526.

Cote DJ, Ostrom QT, Gittleman H, Duncan KR, CreveCoeur TS, Kruchko C, Smith TR, Stampfer MJ, Barnholtz-Sloan JS. Glioma incidence and survival variations by county-level socioeconomic measures. Cancer. 2019 Oct 1;125(19):3390-3400. doi: 10.1002/cncr.32328. Epub 2019 Jun 17. PubMed PMID: 31206646; PubMed Central PMCID: PMC6744292.

Scott KW, Callahan DG, Chen JJ, Lynn MH, Cote DJ, Morenz A, Fisher J, Antoine VL, Lemoine ER, Bakshi SK, Stuart J, Hundert EM, Chang BS, Gooding H. Fostering Student-Faculty Partnerships for Continuous Curricular Improvement in Undergraduate Medical Education. Acad Med. 2019 Jul;94(7):996-1001. doi: 10.1097/ACM.0000000000002726. PubMed PMID: 30920449.

Ostrom QT, Fahmideh MA, Cote DJ, Muskens IS, Schraw JM, Scheurer ME, Bondy ML. Risk factors for childhood and adult primary brain tumors. Neuro Oncol. 2019 Nov  4;21(11):1357-1375. doi: 10.1093/neuonc/noz123. PubMed PMID: 31301133

Senders JT, Staples P, Mehrtash A, Cote DJ, Taphoorn MJB, Reardon DA, Gormley  WB, Smith TR, Broekman ML, Arnaout O. An Online Calculator for the Prediction of  Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning. Neurosurgery. 2019 Oct 5. pii: nyz403. doi: 10.1093/neuros/nyz403. [Epub ahead of print] PubMed PMID: 31586211.

Abudayyeh OO, Gootenberg JS, Franklin B, Koob J, Kellner MJ, Ladha A, Joung J, Kirchgatterer P, Cox DBT, Zhang F. A cytosine deaminase for programmable single-base RNA editing. Science. 2019 Jul 26;365(6451):382-386. doi: 10.1126/science.aax7063. Epub 2019 Jul 11. PubMed PMID: 31296651.

Gillis JE, Coxe DJ, Doench JG, Haining WN, Sharpe AH. A CRISPR-Cas9 delivery system for in vivo screening of genes in the immune system. Nat Commun. 2019 Apr  10;10(1):1668. doi: 10.1038/s41467-019-09656-2. PubMed PMID: 30971695; PubMed Central PMCID: PMC6458184.

Kwok SJJ, Martino N, Dannenberg PH, Yun SH. Multiplexed laser particles for spatially resolved single-cell analysis. Light Sci Appl. 2019 Aug 21;8:74. doi: 10.1038/s41377-019-0183-5. eCollection 2019. PubMed PMID: 31645920; PubMed Central PMCID: PMC6804532

D'Gama JD, Waldor MK. An 'i' for ingenuity. Nat Microbiol. 2019 Jul;4(7):1071-1072. doi: 10.1038/s41564-019-0490-x. PubMed PMID: 31222173.

D'Gama JD, Ma Z, Zhang H, Liu X, Fan H, Morris ERA, Cohen ND, Cywes-Bentley C, Pier GB, Waldor MK. A Conserved Streptococcal Virulence Regulator Controls the Expression of a Distinct Class of M-Like Proteins. MBio. 2019 Oct 22;10(5). pii: e02500-19. doi: 10.1128/mBio.02500-19. PubMed PMID: 31641092; PubMed Central PMCID: PMC6805998.

Hubbard TP, D'Gama JD, Billings G, Davis BM, Waldor MK. Unsupervised Learning  Approach for Comparing Multiple Transposon Insertion Sequencing Studies. mSphere. 2019 Feb 20;4(1). pii: e00031-19. doi: 10.1128/mSphere.00031-19. PubMed PMID: 30787116; PubMed Central PMCID: PMC6382967.

Ligorio M, Sil S, Malagon-Lopez J, Nieman LT, Misale S, Di Pilato M, Ebright RY, Karabacak MN, Kulkarni AS, Liu A, Vincent Jordan N, Franses JW, Philipp J, Kreuzer J, Desai N, Arora KS, Rajurkar M, Horwitz E, Neyaz A, Tai E, Magnus NKC, Vo KD, Yashaswini CN, Marangoni F, Boukhali M, Fatherree JP, Damon LJ, Xega K, Desai R, Choz M, Bersani F, Langenbucher A, Thapar V, Morris R, Wellner UF, Schilling O, Lawrence MS, Liss AS, Rivera MN, Deshpande V, Benes CH, Maheswaran S, Haber DA, Fernandez-Del-Castillo C, Ferrone CR, Haas W, Aryee MJ, Ting DT. Stromal Microenvironment Shapes the Intratumoral Architecture of Pancreatic Cancer. Cell. 2019 Jun 27;178(1):160-175.e27. doi: 10.1016/j.cell.2019.05.012. Epub 2019 May 30. PubMed PMID: 31155233; PubMed Central PMCID: PMC6697165.

Cohen DT, Zhang C, Fadzen CM, Mijalis AJ, Hie L, Johnson KD, Shriver Z, Plante O, Miller SJ, Buchwald SL, Pentelute BL. A chemoselective strategy for late-stage functionalization of complex small molecules with polypeptides and proteins. Nat Chem. 2019 Jan;11(1):78-85. doi: 10.1038/s41557-018-0154-0. Epub 2018 Nov 5. PubMed PMID: 30397320; PubMed Central PMCID: PMC6454892.

Fadzen CM, Holden RL, Wolfe JM, Choo ZN, Schissel CK, Yao M, Hanson GJ, Pentelute BL. Chimeras of Cell-Penetrating Peptides Demonstrate Synergistic Improvement in Antisense Efficacy. Biochemistry. 2019 Sep 24;58(38):3980-3989. doi: 10.1021/acs.biochem.9b00413. Epub 2019 Sep 6. PubMed PMID: 31450889.

Sperling AS, Burgess M, Keshishian H, Gasser JA, Bhatt S, Jan M, SÅ‚abicki M, Sellar RS, Fink EC, Miller PG, Liddicoat BJ, Sievers QL, Sharma R, Adams DN, Olesinski EA, Fulciniti M, Udeshi ND, Kuhn E, Letai A, Munshi NC, Carr SA, Ebert BL. Patterns of substrate affinity, competition, and degradation kinetics underlie biological activity of thalidomide analogs. Blood. 2019 Jul 11;134(2):160-170. doi: 10.1182/blood.2019000789. Epub 2019 May 1. PMID: 31043423; PMCID: PMC6624968.

Lipnick SL, Agniel DM, Aggarwal R, Makhortova NR, Finlayson SG, Brocato A, Palmer N, Darras BT, Kohane I, Rubin LL. Systemic nature of spinal muscular atrophy revealed by studying insurance claims. PLoS One. 2019 Mar 14;14(3):e0213680. doi: 10.1371/journal.pone.0213680. PMID: 30870495; PMCID: PMC6417721.

Beaulieu-Jones B, Finlayson SG, Chivers C, Chen I, McDermott M, Kandola J, Dalca AV, Beam A, Fiterau M, Naumann T. Trends and Focus of Machine Learning Applications for Health Research. JAMA Netw Open. 2019 Oct 2;2(10):e1914051. doi: 10.1001/jamanetworkopen.2019.14051. PMID: 31651969; PMCID: PMC6822089.

Beaulieu-Jones BK, Finlayson SG, Yuan W, Altman RB, Kohane IS, Prasad V, Yu KH. Examining the Use of Real-World Evidence in the Regulatory Process. Clin Pharmacol Ther. 2019 Sep 28;10.1002/cpt.1658. doi: 10.1002/cpt.1658. [Epub ahead of print]. PMID: 31562770.

Vinyard ME, Su C, Siegenfeld AP, Waterbury AL, Freedy AM, Gosavi PM, Park Y, Kwan EE, Senzer BD, Doench JG, Bauer DE, Pinello L, Liau BB. CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML. Nat Chem Biol. 2019 May;15(5):529-539. doi: 10.1038/s41589-019-0263-0. Epub 2019 Apr 15. PMID: 30992567.

Brahmachari S, Lee S, Kim S, Yuan C, Karuppagounder SS, Ge P, Shi R, Kim EJ, Liu A, Kim D, Quintin S, Jiang H, Kumar M, Yun SP, Kam TI, Mao X, Lee Y, Swing DA, Tessarollo L, Ko HS, Dawson VL, Dawson TM. Parkin interacting substrate zinc finger protein 746 is a pathological mediator in Parkinson's disease. Brain. 2019 Aug 1;142(8):2380-2401. doi: 10.1093/brain/awz172. PMID: 31237944; PMCID: PMC6658849.

Fulco CP, Nasser J, Jones TR, Munson G, Bergman DT, Subramanian V, Grossman SR, Anyoha R, Doughty BR, Patwardhan TA, Nguyen TH, Kane M, Perez EM, Durand NC, Lareau CA, Stamenova EK, Aiden EL, Lander ES, Engreitz JM. Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations. Nat Genet. 2019 Dec;51(12):1664-1669. doi: 10.1038/s41588-019-0538-0. Epub 2019 Nov 29. PMID: 31784727; PMCID: PMC6886585.

Gutierrez C, Wu CJ. Clonal dynamics in chronic lymphocytic leukemia. Hematology Am Soc Hematol Educ Program. 2019 Dec 6;2019(1):466-475. doi: 10.1182/hematology.2019000367. PMID: 31808879; PMCID: PMC6913465.

Gutierrez C, Wu CJ. Clonal dynamics in chronic lymphocytic leukemia. Blood Adv. 2019 Nov 26;3(22):3759-3769. doi: 10.1182/bloodadvances.2019000367. PMID: 31770443; PMCID: PMC6880909.

Hauser BM, Lau A, Gupta S, Bi WL, Dunn IF. The Epigenomics of Pituitary Adenoma. Front Endocrinol (Lausanne). 2019 May 14;10:290. doi:10.3389/fendo.2019.00290. eCollection 2019. Review. PubMed PMID: 31139150; PubMed Central PMCID: PMC6527758.

Gupta S, Hauser BM, Zaki MM, Xu E, Cote DJ, Lu Y, Chi JH, Groff M, Khawaja AM, Harris MB, Smith TR, Zaidi HA. Morbidity after traumatic spinal injury in pediatric and adolescent sports-related trauma. J Neurosurg Spine. 2019 Dec 27:1-7. doi: 10.3171/2019.10.SPINE19712. Epub ahead of print. PMID: 31881536; PMCID: PMC7383358.

Hayirli TC, Martelli PF. Gene drives as a response to infection and resistance. Infect Drug Resist. 2019 Jan 14;12:229-234. doi: 10.2147/IDR.S187424.eCollection 2019. PubMed PMID: 30666138; PubMed Central PMCID: PMC6336018.

Kotliar D, Veres A, Nagy MA, Tabrizi S, Hodis E, Melton DA, Sabeti PC. Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq. Elife. 2019 Jul 8;8. pii: e43803. doi: 10.7554/eLife.43803. [Epub ahead of print] PubMed PMID: 31282856.

Wang X, Wang S, Troisi EC, Howard TP, Haswell JR, Wolf BK, Hawk WH, Ramos P, Oberlick EM, Tzvetkov EP, Ross A, Vazquez F, Hahn WC, Park PJ, Roberts CWM. BRD9 defines a SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors. Nat Commun. 2019 Apr 23;10(1):1881. doi: 10.1038/s41467-019-09891-7. Erratum in: Nat Commun. 2019 Sep 26;10(1):4445. PMID: 31015438; PMCID: PMC6479050.

Wang X, Wang S, Troisi EC, Howard TP, Haswell JR, Wolf BK, Hawk WH, Ramos P, Oberlick EM, Tzvetkov EP, Ross A, Vazquez F, Hahn WC, Park PJ, Roberts CWM. Author Correction: BRD9 defines a SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors. Nat Commun. 2019 Sep 26;10(1):4445. doi: 10.1038/s41467-019-12524-8. Erratum for: Nat Commun. 2019 Apr 23;10(1):1881. PMID: 31558726; PMCID: PMC6763484.

Hong AL, Tseng YY, Wala JA, Kim WJ, Kynnap BD, Doshi MB, Kugener G, Sandoval GJ, Howard TP, Li J, Yang X, Tillgren M, Ghandi M, Sayeed A, Deasy R, Ward A, McSteen B, Labella KM, Keskula P, Tracy A, Connor C, Clinton CM, Church AJ, Crompton BD, Janeway KA, Van Hare B, Sandak D, Gjoerup O, Bandopadhayay P, Clemons PA, Schreiber SL, Root DE, Gokhale PC, Chi SN, Mullen EA, Roberts CW, Kadoch C, Beroukhim R, Ligon KL, Boehm JS, Hahn WC. Renal medullary carcinomas depend upon SMARCB1 loss and are sensitive to proteasome inhibition. Elife. 2019 Mar 12;8. pii: e44161. doi: 10.7554/eLife.44161. PubMed PMID: 30860482; PubMed Central PMCID: PMC6436895.

Howard TP, Arnoff TE, Song MR, Giacomelli AO, Wang X, Hong AL, Dharia NV, Wang S, Vazquez F, Pham MT, Morgan AM, Wachter F, Bird GH, Kugener G, Oberlick EM, Rees MG, Tiv HL, Hwang JH, Walsh KH, Cook A, Krill-Burger JM, Tsherniak A, Gokhale PC, Park PJ, Stegmaier K, Walensky LD, Hahn WC, Roberts CWM. MDM2 and MDM4 Are Therapeutic Vulnerabilities in Malignant Rhabdoid Tumors. Cancer Res. 2019 May 1;79(9):2404-2414. doi: 10.1158/0008-5472.CAN-18-3066. Epub 2019 Feb 12. PubMed PMID: 30755442; PubMed Central PMCID: PMC6497578.

van Galen P, Hovestadt V, Wadsworth Ii MH, Hughes TK, Griffin GK, Battaglia S, Verga JA, Stephansky J, Pastika TJ, Lombardi Story J, Pinkus GS, Pozdnyakova O, Galinsky I, Stone RM, Graubert TA, Shalek AK, Aster JC, Lane AA, Bernstein BE. Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity. Cell. 2019 Mar 7;176(6):1265-1281.e24. doi: 10.1016/j.cell.2019.01.031. Epub 2019 Feb 28. PMID: 30827681; PMCID: PMC6515904.

Aicher TP, Carroll S, Raddi G, Gierahn T, Wadsworth MH 2nd, Hughes TK, Love C, Shalek AK. Seq-Well: A Sample-Efficient, Portable Picowell Platform for Massively Parallel Single-Cell RNA Sequencing. Methods Mol Biol. 2019;1979:111-132. doi: 10.1007/978-1-4939-9240-9_8. PMID: 31028635.

Spallanzani RG, Zemmour D, Xiao T, Jayewickreme T, Li C, Bryce PJ, Benoist C, Mathis D. Distinct immunocyte-promoting and adipocyte-generating stromal components coordinate adipose tissue immune and metabolic tenors. Sci Immunol. 2019 May 3;4(35):eaaw3658. doi: 10.1126/sciimmunol.aaw3658. PMID: 31053654; PMCID: PMC6648660.

Kalluri AS, Vellarikkal SK, Edelman ER, Nguyen L, Subramanian A, Ellinor PT, Regev A, Kathiresan S, Gupta RM. Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial Cell Populations. Circulation. 2019 Jul 9;140(2):147-163. doi: 10.1161/CIRCULATIONAHA.118.038362. Epub 2019 May 31. PMID: 31146585; PMCID: PMC6693656.

Candelaria L, Kalugin PN, Kowalski BM, Kalugin NG. Covalent Epitope Decoration of Carbon Electrodes using Solid Phase Peptide Synthesis. Sci Rep. 2019;9(1):17805. Published 2019 Nov 28. doi:10.1038/s41598-019-54000-9

Karandinos G, Bourgois P. The Structural Violence of Hyperincarceration - A 44-Year-Old Man with Back Pain. N Engl J Med. 2019 Jan 17;380(3):205-209. doi: 10.1056/NEJMp1811542. PMID: 30650324; PMCID: PMC6689242.

Friedman J, Karandinos G, Hart LK, Castrillo FM, Graetz N, Bourgois P. Structural vulnerability to narcotics-driven firearm violence: An ethnographic and epidemiological study of Philadelphia's Puerto Rican inner-city. PLoS One. 2019 Nov 21;14(11):e0225376. doi: 10.1371/journal.pone.0225376. PMID: 31751394; PMCID: PMC6872141.

Rogala KB, Gu X, Kedir JF, Abu-Remaileh M, Bianchi LF, Bottino AMS, Dueholm R, Niehaus A, Overwijn D, Fils AP, Zhou SX, Leary D, Laqtom NN, Brignole EJ, Sabatini DM. Structural basis for the docking of mTORC1 on the lysosomal surface. Science. 2019 Oct 25;366(6464):468-475. doi: 10.1126/science.aay0166. Epub 2019 Oct 10. PMID: 31601708.

Ast T, Meisel JD, Patra S, Wang H, Grange RMH, Kim SH, Calvo SE, Orefice LL, Nagashima F, Ichinose F, Zapol WM, Ruvkun G, Barondeau DP, Mootha VK. Hypoxia Rescues Frataxin Loss by Restoring Iron Sulfur Cluster Biogenesis. Cell. 2019 May 30;177(6):1507-1521.e16. doi: 10.1016/j.cell.2019.03.045. Epub 2019 Apr 25. PMID: 31031004.

To TL, Cuadros AM, Shah H, Hung WHW, Li Y, Kim SH, Rubin DHF, Boe RH, Rath S, Eaton JK, Piccioni F, Goodale A, Kalani Z, Doench JG, Root DE, Schreiber SL, Vafai SB, Mootha VK. A Compendium of Genetic Modifiers of Mitochondrial Dysfunction Reveals Intra-organelle Buffering. Cell. 2019 Nov 14;179(5):1222-1238.e17. doi: 10.1016/j.cell.2019.10.032. PMID: 31730859; PMCID: PMC7053407.

Karlsson Linnér R, Biroli P, Kong E, Meddens SFW, Wedow R, Fontana MA, Lebreton M, Tino SP, Abdellaoui A, Hammerschlag AR, Nivard MG, Okbay A, Rietveld  CA, Timshel PN, Trzaskowski M, Vlaming R, Zünd CL, Bao Y, Buzdugan L, Caplin AH,  Chen CY, Eibich P, Fontanillas P, Gonzalez JR, Joshi PK, Karhunen V, Kleinman A,  Levin RZ, Lill CM, Meddens GA, Muntané G, Sanchez-Roige S, Rooij FJV, Taskesen E, Wu Y, Zhang F; 23and Me Research Team; eQTLgen Consortium; International Cannabis Consortium; Social Science Genetic Association Consortium, Auton A, Boardman JD,  Clark DW, Conlin A, Dolan CC, Fischbacher U, Groenen PJF, Harris KM, Hasler G, Hofman A, Ikram MA, Jain S, Karlsson R, Kessler RC, Kooyman M, MacKillop J, Männikkö M, Morcillo-Suarez C, McQueen MB, Schmidt KM, Smart MC, Sutter M, Thurik AR, Uitterlinden AG, White J, Wit H, Yang J, Bertram L, Boomsma DI, Esko T, Fehr  E, Hinds DA, Johannesson M, Kumari M, Laibson D, Magnusson PKE, Meyer MN, Navarro A, Palmer AA, Pers TH, Posthuma D, Schunk D, Stein MB, Svento R, Tiemeier H, Timmers PRHJ, Turley P, Ursano RJ, Wagner GG, Wilson JF, Gratten J, Lee JJ, Cesarini D, Benjamin DJ, Koellinger PD, Beauchamp JP. Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. Nat Genet. 2019 Jan 14.  doi: 10.1038/s41588-018-0309-3. [Epub ahead of print] PubMed PMID: 30643258.

Kotliar D, Veres A, Nagy MA, Tabrizi S, Hodis E, Melton DA, Sabeti PC. Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq. Elife. 2019 Jul 8;8. pii: e43803. doi: 10.7554/eLife.43803. [Epub ahead of print] PubMed PMID: 31282856.

Miller BC, Sen DR, Al Abosy R, Bi K, Virkud YV, LaFleur MW, Yates KB, Lako A, Felt K, Naik GS, Manos M, Gjini E, Kuchroo JR, Ishizuka JJ, Collier JL, Griffin GK, Maleri S, Comstock DE, Weiss SA, Brown FD, Panda A, Zimmer MD, Manguso RT, Hodi FS, Rodig SJ, Sharpe AH, Haining WN. Subsets of exhausted CD8<sup>+</sup> T cells differentially mediate tumor control and respond to checkpoint blockade. Nat Immunol. 2019 Mar;20(3):326-336. doi: 10.1038/s41590-019-0312-6. Epub 2019 Feb 18. Erratum in: Nat Immunol. 2019 Nov;20(11):1556. PMID: 30778252; PMCID: PMC6673650.

Miller BC, Sen DR, Al Abosy R, Bi K, Virkud YV, LaFleur MW, Yates KB, Lako A, Felt K, Naik GS, Manos M, Gjini E, Kuchroo JR, Ishizuka JJ, Collier JL, Griffin GK, Maleri S, Comstock DE, Weiss SA, Brown FD, Panda A, Zimmer MD, Manguso RT, Hodi FS, Rodig SJ, Sharpe AH, Haining WN. Author Correction: Subsets of exhausted CD8<sup>+</sup> T cells differentially mediate tumor control and respond to checkpoint blockade. Nat Immunol. 2019 Nov;20(11):1556. doi: 10.1038/s41590-019-0528-5. Erratum for: Nat Immunol. 2019 Mar;20(3):326-336. PMID: 31582823.

Kwok SJJ, Martino N, Dannenberg PH, Yun SH. Multiplexed laser particles for spatially resolved single-cell analysis. Light Sci Appl. 2019 Aug 21;8:74. doi: 10.1038/s41377-019-0183-5. eCollection 2019. PubMed PMID: 31645920; PubMed Central PMCID: PMC6804532.

Forward S, Kwok SJJ, Yun SH. Bioresorbable spectrometers. Nat Biomed Eng. 2019 Aug;3(8):594-595. doi: 10.1038/s41551-019-0441-0. PMID: 31391593.

Kwok SJJ, Forward S, Wertheimer CM, Liapis AC, Lin HH, Kim M, Seiler TG, Birngruber R, Kochevar IE, Seiler T, Yun SH. Selective Equatorial Sclera Crosslinking in the Orbit Using a Metal-Coated Polymer Waveguide. Invest Ophthalmol Vis Sci. 2019 Jun 3;60(7):2563-2570. doi: 10.1167/iovs.19-26709. PMID: 31212308; PMCID: PMC6586079.

Lee SJ, Chen Y, Lodder B, Sabatini BL. Monitoring Behaviorally Induced Biochemical Changes Using Fluorescence Lifetime Photometry. Front Neurosci. 2019 Jul 31;13:766. doi: 10.3389/fnins.2019.00766. PMID: 31417343; PMCID: PMC6685078.

Pisano F, Pisanello M, Lee SJ, Lee J, Maglie E, Balena A, Sileo L, Spagnolo B, Bianco M, Hyun M, De Vittorio M, Sabatini BL, Pisanello F. Depth-resolved fiber photometry with a single tapered optical fiber implant. Nat Methods. 2019 Nov;16(11):1185-1192. doi: 10.1038/s41592-019-0581-x. Epub 2019 Oct 7. PMID: 31591577.

Li A, Herbst RH, Canner D, Schenkel JM, Smith OC, Kim JY, Hillman M, Bhutkar A, Cuoco MS, Rappazzo CG, Rogers P, Dang C, Jerby-Arnon L, Rozenblatt-Rosen O, Cong L, Birnbaum M, Regev A, Jacks T. IL-33 Signaling Alters Regulatory T Cell Diversity in Support of Tumor Development. Cell Rep. 2019 Dec 3;29(10):2998-3008.e8. doi: 10.1016/j.celrep.2019.10.120. PMID: 31801068; PMCID: PMC6990979.

Li DJ, McMann CL, Reddien PW. Nuclear receptor NR4A is required for patterning at the ends of the planarian anterior-posterior axis. Elife. 2019 Apr 26;8. pii: e42015. doi: 10.7554/eLife.42015. [Epub ahead of print] PubMed PMID: 31025936.

Li EB, Song JS, Huang JT, Hawryluk EB, London WB, Guo D, Sridharan M, Fisher DE, Rea CJ, Lehmann LE, Duncan CN. Sun exposure and protection practices in children after allogeneic hematopoietic stem cell transplantation: A Survey-Based Cross-Sectional Cohort Study. Pediatr Dermatol. 2019 Aug 13;10.1111/pde.13984. doi: 10.1111/pde.13984. [Epub ahead of print]. PMID: 31410910.

Li EB, Todd P, Song H, Huang JT. Dermatologic care and sun protection practices need improvement in childhood cancer survivors. J Am Acad Dermatol. 2019 Aug;81(2):618-620. doi: 10.1016/j.jaad.2018.12.044. Epub 2019 Jan 8. PMID: 30630027.

Kousa YA, Zhu H, Fakhouri WD, Lei Y, Kinoshita A, Roushangar RR, Patel NK, Agopian AJ, Yang W, Leslie EJ, Busch TD, Mansour TA, Li X, Smith AL, Li EB, Sharma DB, Williams TJ, Chai Y, Amendt BA, Liao EC, Mitchell LE, Bassuk AG, Gregory S, Ashley-Koch A, Shaw GM, Finnell RH, Schutte BC. The TFAP2A-IRF6-GRHL3 genetic pathway is conserved in neurulation. Hum Mol Genet. 2019 May 15;28(10):1726-1737. doi: 10.1093/hmg/ddz010. PMID: 30689861; PMCID: PMC6494790.

Lossos C, Liu Y, Kolb KE, Christie AL, Van Scoyk A, Prakadan SM, Shigemori K, Stevenson KE, Morrow S, Plana OD, Fraser C, Jones KL, Liu H, Pallasch CP, Modiste R, Nguyen QD, Craig JW, Morgan EA, Vega F, Aster JC, Sarosiek KA, Shalek AK, Hemann MT, Weinstock DM. Mechanisms of Lymphoma Clearance Induced by High-Dose Alkylating Agents. Cancer Discov. 2019 Jul;9(7):944-961. doi: 10.1158/2159-8290.CD-18-1393. Epub 2019 Apr 30. PMID: 31040105; PMCID: PMC6606344.

Fisher YE, Lu J, D'Alessandro I, Wilson RI. Sensorimotor experience remaps visual input to a heading-direction network. Nature. 2019 Nov 20;10.1038/s41586-019-1772-4. doi: 10.1038/s41586-019-1772-4. [Epub ahead of print]. PMID: 31748749.

Sher F, Hossain M, Seruggia D, Schoonenberg VAC, Yao Q, Cifani P, Dassama LMK, Cole MA, Ren C, Vinjamur DS, Macias-Trevino C, Luk K, McGuckin C, Schupp PG, Canver MC, Kurita R, Nakamura Y, Fujiwara Y, Wolfe SA, Pinello L, Maeda T, Kentsis A, Orkin SH, Bauer DE. Rational targeting of a NuRD subcomplex guided by comprehensive in situ mutagenesis. Nat Genet. 2019 Jul;51(7):1149-1159. doi: 10.1038/s41588-019-0453-4. Epub 2019 Jun 28. PMID: 31253978; PMCID: PMC6650275.

Pan J, McKenzie ZM, D'Avino AR, Mashtalir N, Lareau CA, St Pierre R, Wang L, Shilatifard A, Kadoch C. The ATPase module of mammalian SWI/SNF family complexes mediates subcomplex identity and catalytic activity-independent genomic targeting. Nat Genet. 2019 Apr;51(4):618-626. doi: 10.1038/s41588-019-0363-5. Epub 2019 Mar 11. PMID: 30858614; PMCID: PMC6755913.

Chakraborty AA, Laukka T, Myllykoski M, Ringel AE, Booker MA, Tolstorukov MY, Meng YJ, Meier SR, Jennings RB, Creech AL, Herbert ZT, McBrayer SK, Olenchock BA, Jaffe JD, Haigis MC, Beroukhim R, Signoretti S, Koivunen P, Kaelin WG Jr. Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate. Science. 2019 Mar 15;363(6432):1217-1222. doi: 10.1126/science.aaw1026. Epub 2019 Mar 14. PMID: 30872525.

Forget MA, Haymaker C, Hess KR, Meng YJ, Creasy C, Karpinets T, Fulbright OJ, Roszik J, Woodman SE, Kim YU, Sakellariou-Thompson D, Bhatta A, Wahl A, Flores E, Thorsen ST, Tavera RJ, Ramachandran R, Gonzalez AM, Toth CL, Wardell S, Mansaray R, Patel V, Carpio DJ, Vaughn C, Farinas CM, Velasquez PG, Hwu WJ, Patel SP, Davies MA, Diab A, Glitza IC, Tawbi H, Wong MK, Cain S, Ross MI, Lee JE, Gershenwald JE, Lucci A, Royal R, Cormier JN, Wargo JA, Radvanyi LG, Torres-Cabala CA, Beroukhim R, Hwu P, Amaria RN, Bernatchez C. Prospective Analysis of Adoptive TIL Therapy in Patients with Metastatic Melanoma: Response, Impact of Anti-CTLA4, and Biomarkers to Predict Clinical Outcome. Clin Cancer Res. 2018 Sep 15;24(18):4416-4428. doi: 10.1158/1078-0432.CCR-17-3649. Epub 2018 May 30. PMID: 29848573; PMCID: PMC6139043.

Mengwasser KE, Adeyemi RO, Leng Y, Choi MY, Clairmont C, D'Andrea AD, Elledge SJ. Genetic Screens Reveal FEN1 and APEX2 as BRCA2 Synthetic Lethal Targets. Mol Cell. 2019 Mar 7;73(5):885-899.e6. doi: 10.1016/j.molcel.2018.12.008. Epub 2019 Jan 24. PMID: 30686591.

Elman JS, Ni TK, Mengwasser KE, Jin D, Wronski A, Elledge SJ, Kuperwasser C. Identification of FUBP1 as a Long Tail Cancer Driver and Widespread Regulator of Tumor Suppressor and Oncogene Alternative Splicing. Cell Rep. 2019 Sep 24;28(13):3435-3449.e5. doi: 10.1016/j.celrep.2019.08.060. PMID: 31553912.

Mikhael JG, Gershman SJ. Adapting the flow of time with dopamine. J Neurophysiol. 2019 May 1;121(5):1748-1760. doi: 10.1152/jn.00817.2018. Epub 2019 Mar 13. PMID: 30864882; PMCID: PMC6589719.

Howard TP, Arnoff TE, Song MR, Giacomelli AO, Wang X, Hong AL, Dharia NV, Wang S, Vazquez F, Pham MT, Morgan AM, Wachter F, Bird GH, Kugener G, Oberlick EM, Rees MG, Tiv HL, Hwang JH, Walsh KH, Cook A, Krill-Burger JM, Tsherniak A, Gokhale PC, Park PJ, Stegmaier K, Walensky LD, Hahn WC, Roberts CWM. MDM2 and MDM4 Are Therapeutic Vulnerabilities in Malignant Rhabdoid Tumors. Cancer Res. 2019 May 1;79(9):2404-2414. doi: 10.1158/0008-5472.CAN-18-3066. Epub 2019 Feb 12. PubMed PMID: 30755442; PubMed Central PMCID: PMC6497578.

Hrvatin S, Tzeng CP, Nagy MA, Stroud H, Koutsioumpa C, Wilcox OF, Assad EG, Green J, Harvey CD, Griffith EC, Greenberg ME. A scalable platform for the development of cell-type-specific viral drivers. Elife. 2019 Sep 23;8. pii: e48089. doi: 10.7554/eLife.48089. [Epub ahead of print] PubMed PMID: 31545165.

Sharma N, Pollina EA, Nagy MA, Yap EL, DiBiase FA, Hrvatin S, Hu L, Lin C, Greenberg ME. ARNT2 Tunes Activity-Dependent Gene Expression through NCoR2-Mediated Repression and NPAS4-Mediated Activation. Neuron. 2019 Apr 17;102(2):390-406.e9. doi: 10.1016/j.neuron.2019.02.007. Epub 2019 Mar 4. PMID: 30846309; PMCID: PMC6504996.

Kotliar D, Veres A, Nagy MA, Tabrizi S, Hodis E, Melton DA, Sabeti PC. Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq. Elife. 2019 Jul 8;8:e43803. doi: 10.7554/eLife.43803. PMID: 31282856; PMCID: PMC6639075.

Gunner G, Cheadle L, Johnson KM, Ayata P, Badimon A, Mondo E, Nagy MA, Liu L, Bemiller SM, Kim KW, Lira SA, Lamb BT, Tapper AR, Ransohoff RM, Greenberg ME, Schaefer A, Schafer DP. Sensory lesioning induces microglial synapse elimination via ADAM10 and fractalkine signaling. Nat Neurosci. 2019 Jul;22(7):1075-1088. doi: 10.1038/s41593-019-0419-y. Epub 2019 Jun 17. PMID: 31209379; PMCID: PMC6596419.

Kotliar D, Veres A, Nagy MA, Tabrizi S, Hodis E, Melton DA, Sabeti PC. Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq. Elife. 2019 Jul 8;8. pii: e43803. doi: 10.7554/eLife.43803. [Epub ahead of print] PubMed PMID: 31282856.

Shinde V, Narasimhan VM, Rohland N, Mallick S, Mah M, Lipson M, Nakatsuka N, Adamski N, Broomandkhoshbacht N, Ferry M, Lawson AM, Michel M, Oppenheimer J, Stewardson K, Jadhav N, Kim YJ, Chatterjee M, Munshi A, Panyam A, Waghmare P, Yadav Y, Patel H, Kaushik A, Thangaraj K, Meyer M, Patterson N, Rai N, Reich D. An Ancient Harappan Genome Lacks Ancestry from Steppe Pastoralists or Iranian Farmers. Cell. 2019 Oct 17;179(3):729-735.e10. doi: 10.1016/j.cell.2019.08.048. Epub 2019 Sep 5. PMID: 31495572; PMCID: PMC6800651.

Narasimhan VM, Patterson N, Moorjani P, Rohland N, Bernardos R, Mallick S, Lazaridis I, Nakatsuka N, Olalde I, Lipson M, Kim AM, Olivieri LM, Coppa A, Vidale M, Mallory J, Moiseyev V, Kitov E, Monge J, Adamski N, Alex N, Broomandkhoshbacht N, Candilio F, Callan K, Cheronet O, Culleton BJ, Ferry M, Fernandes D, Freilich S, Gamarra B, Gaudio D, Hajdinjak M, Harney É, Harper TK, Keating D, Lawson AM, Mah M, Mandl K, Michel M, Novak M, Oppenheimer J, Rai N, Sirak K, Slon V, Stewardson K, Zalzala F, Zhang Z, Akhatov G, Bagashev AN, Bagnera A, Baitanayev B, Bendezu-Sarmiento J, Bissembaev AA, Bonora GL, Chargynov TT, Chikisheva T, Dashkovskiy PK, Derevianko A, DobeÅ¡ M, Douka K, Dubova N, Duisengali MN, Enshin D, Epimakhov A, Fribus AV, Fuller D, Goryachev A, Gromov A, Grushin SP, Hanks B, Judd M, Kazizov E, Khokhlov A, Krygin AP, Kupriyanova E, Kuznetsov P, Luiselli D, Maksudov F, Mamedov AM, Mamirov TB, Meiklejohn C, Merrett DC, Micheli R, Mochalov O, Mustafokulov S, Nayak A, Pettener D, Potts R, Razhev D, Rykun M, Sarno S, Savenkova TM, Sikhymbaeva K, Slepchenko SM, Soltobaev OA, Stepanova N, Svyatko S, Tabaldiev K, Teschler-Nicola M, Tishkin AA, Tkachev VV, Vasilyev S, Velemínský P, Voyakin D, Yermolayeva A, Zahir M, Zubkov VS, Zubova A, Shinde VS, Lalueza-Fox C, Meyer M, Anthony D, Boivin N, Thangaraj K, Kennett DJ, Frachetti M, Pinhasi R, Reich D. The formation of human populations in South and Central Asia. Science. 2019 Sep 6;365(6457):eaat7487. doi: 10.1126/science.aat7487. PMID: 31488661; PMCID: PMC6822619.

Neel DV, Shulman DS, DuBois SG. Timing of first-in-child trials of FDA-approved oncology drugs. Eur J Cancer. 2019 May;112:49-56. doi: 10.1016/j.ejca.2019.02.011. Epub 2019 Mar 28. PMID: 30928805; PMCID: PMC6491224.

Nwanaji-Enwerem JC, Bernier D, Lipsitz MC. Bedside Cardiac Ultrasound: Suprasternal Notch View-Detected Pulmonary Artery Clot in Transit. J Emerg Med. 2019 Dec 3;S0736-4679(19)30842-X. doi: 10.1016/j.jemermed.2019.10.010. [Epub ahead of print]. PMID: 31810833.

Nwanaji-Enwerem JC, Bernier D, Harris OM. Elderly Man with Post Myocardial Infarction Fatigue. J Emerg Med. 2019 Sep;57(3):395-396. doi: 10.1016/j.jemermed.2019.06.041. Epub 2019 Aug 12. PMID: 31416652.

Gao X, Colicino E, Shen J, Just AC, Nwanaji-Enwerem JC, Coull B, Lin X, Vokonas P, Zheng Y, Hou L, Schwartz J, Baccarelli AA. Correction for: Accelerated DNA methylation age and the use of antihypertensive medication among older adults. Aging (Albany NY). 2019 May 15;11(9):2911. doi: 10.18632/aging.101980. Erratum for: Aging (Albany NY). 2018 Nov 10;10(11):3210-3228. PMID: 31102506; PMCID: PMC6535072.

Gao X, Colicino E, Shen J, Kioumourtzoglou MA, Just AC, Nwanaji-Enwerem JC, Coull B, Lin X, Vokonas P, Zheng Y, Hou L, Schwartz J, Baccarelli AA. Impacts of air pollution, temperature, and relative humidity on leukocyte distribution: An epigenetic perspective. Environ Int. 2019 May;126:395-405. doi: 10.1016/j.envint.2019.02.053. Epub 2019 Feb 28. PMID: 30826618; PMCID: PMC6441628.

Gao X, Colicino E, Shen J, Just AC, Nwanaji-Enwerem JC, Wang C, Coull B, Lin X, Vokonas P, Zheng Y, Hou L, Schwartz J, Baccarelli AA. Comparative validation of an epigenetic mortality risk score with three aging biomarkers for predicting mortality risks among older adult males. Int J Epidemiol. 2019 Apr 30;dyz082. doi: 10.1093/ije/dyz082. [Epub ahead of print]. PMID: 31038702.

Nwanaji-Enwerem JC, Cardenas A, Chai PR, Weisskopf MG, Baccarelli AA, Boyer EW. Relationships of Long-Term Smoking and Moist Snuff Consumption With a DNA Methylation Age Relevant Smoking Index: An Analysis in Buccal Cells. Nicotine Tob Res. 2019 Aug 19;21(9):1267-1273. doi: 10.1093/ntr/nty156. PMID: 30053132; PMCID: PMC6941707.

Schaefer K, Owens TW, Page JE, Santiago M, Kahne D, Walker S. Structure and reconstitution of a hydrolase complex that may release peptidoglycan from the membrane after polymerization. Nat Microbiol. 2020 Nov 9. doi: 10.1038/s41564-020-00808-5. Epub ahead of print. PMID: 33168989.

Chang CY, Abujaber S, Pany MJ, Obermeyer Z. Are vital sign abnormalities associated with poor outcomes after emergency department discharge? Acute Med. 2019;18(2):88-95. PMID: 31127797.

Yermalovich AV, Osborne JK, Sousa P, Han A, Kinney MA, Chen MJ, Robinton DA, Montie H, Pearson DS, Wilson SB, Combes AN, Little MH, Daley GQ. 2019. Lin28 and let-7 regulate the timing of cessation of murine nephrogenesis. Nat Commun. Jan 11;10(1):168. doi: 10.1038/s41467-018-08127-4. PMID: 30635573

Wojtaszek JL, Chatterjee N, Najeeb J, Ramos A, Lee M, Bian K, Xue JY, Fenton BA, Park H, Li D, Hemann MT, Hong J, Walker GC, Zhou P. A Small Molecule Targeting Mutagenic Translesion Synthesis Improves Chemotherapy. Cell. 2019 Jun 27;178(1):152-159.e11. doi: 10.1016/j.cell.2019.05.028. Epub 2019 Jun 6. PMID: 31178121; PMCID: PMC6644000.

Raoof S, Mulford IJ, Frisco-Cabanos H, Nangia V, Timonina D, Labrot E, Hafeez N, Bilton SJ, Drier Y, Ji F, Greenberg M, Williams A, Kattermann K, Damon L, Sovath S, Rakiec DP, Korn JM, Ruddy DA, Benes CH, Hammerman PS, Piotrowska Z, Sequist LV, Niederst MJ, Barretina J, Engelman JA, Hata AN. Targeting FGFR overcomes EMT-mediated resistance in EGFR mutant non-small cell lung cancer. Oncogene. 2019 Sep;38(37):6399-6413. doi: 10.1038/s41388-019-0887-2. Epub 2019 Jul 19. PMID: 31324888; PMCID: PMC6742540.

Raoof S, Deng F, Cusack J. Abdomen distended by 31 L of cerebrospinal fluid: a peritoneal pseudocyst around a ventriculoperitoneal shunt. Lancet. 2019 Dec 7;394(10214):2118. doi: 10.1016/S0140-6736(19)32683-2. PMID: 31818411.

Zhang Y, Zhou CK, Rencsok EM, Fall K, Lotan TL, Loda M, Giunchi F, Platz EA, De Marzo AM, Mucci LA, Fiorentino M, Ebot EM. A Prospective Study of Intraprostatic Inflammation, Focal Atrophy, and Progression to Lethal Prostate Cancer. Cancer Epidemiol Biomarkers Prev. 2019 Dec;28(12):2047-2054. doi: 10.1158/1055-9965.EPI-19-0713. Epub 2019 Sep 18. PMID: 31533941.

Galinsky KJ, Reshef YA, Finucane HK, Loh PR, Zaitlen N, Patterson NJ, Brown BC, Price AL. Estimating cross-population genetic correlations of causal effect sizes. Genet Epidemiol. 2019 Mar;43(2):180-188. doi: 10.1002/gepi.22173. Epub 2018 Nov 25. PMID: 30474154; PMCID: PMC6375794.

van de Geijn B, Finucane H, Gazal S, Hormozdiari F, Amariuta T, Liu X, Gusev A, Loh PR, Reshef Y, Kichaev G, Raychauduri S, Price AL. Annotations capturing cell-type-specific TF binding explain a large fraction of disease heritability. Hum Mol Genet. 2019 Oct 9;ddz226. doi: 10.1093/hmg/ddz226. [Epub ahead of print]. PMID: 31595288.

Abuelezam NN, Reshef YA, Novak D, Grad YH, Seage Iii GR, Mayer K, Lipsitch M. Interaction Patterns of Men Who Have Sex With Men on a Geosocial Networking Mobile App in Seven United States Metropolitan Areas: Observational Study. J Med Internet Res. 2019 Sep 12;21(9):e13766. doi: 10.2196/13766. PMID: 31516124; PMCID: PMC6746104.

Bohrson CL, Barton AR, Lodato MA, Rodin RE, Luquette LJ, Viswanadham VV, Gulhan DC, Cortés-Ciriano I, Sherman MA, Kwon M, Coulter ME, Galor A, Walsh CA, Park PJ. Linked-read analysis identifies mutations in single-cell DNA-sequencing data. Nat Genet. 2019 Apr;51(4):749-754. doi: 10.1038/s41588-019-0366-2. Epub 2019 Mar 18. PMID: 30886424; PMCID: PMC6900933.

To TL, Cuadros AM, Shah H, Hung WHW, Li Y, Kim SH, Rubin DHF, Boe RH, Rath S, Eaton JK, Piccioni F, Goodale A, Kalani Z, Doench JG, Root DE, Schreiber SL, Vafai SB, Mootha VK. A Compendium of Genetic Modifiers of Mitochondrial Dysfunction Reveals Intra-organelle Buffering. Cell. 2019 Nov 14;179(5):1222-1238.e17. doi: 10.1016/j.cell.2019.10.032. PMID: 31730859.

Lo WL, Shah NH, Rubin SA, Zhang W, Horkova V, Fallahee IR, Stepanek O, Zon LI, Kuriyan J, Weiss A. Slow phosphorylation of a tyrosine residue in LAT optimizes T cell ligand discrimination. Nat Immunol. 2019 Nov;20(11):1481-1493. doi: 10.1038/s41590-019-0502-2. Epub 2019 Oct 14. PMID: 31611699; PMCID: PMC6858552.

Park JO, Tanner LB, Wei MH, Khana DB, Jacobson TB, Zhang Z, Rubin SA, Li SH, Higgins MB, Stevenson DM, Amador-Noguez D, Rabinowitz JD. Near-equilibrium glycolysis supports metabolic homeostasis and energy yield. Nat Chem Biol. 2019 Oct;15(10):1001-1008. doi: 10.1038/s41589-019-0364-9. Epub 2019 Sep 23. PMID: 31548693.

Corleis B, Bucsan AN, Deruaz M, Vrbanac VD, Lisanti-Park AC, Gates SJ, Linder AH, Paer JM, Olson GS, Bowman BA, Schiff AE, Medoff BD, Tager AM, Luster AD, Khader SA, Kaushal D, Kwon DS. HIV-1 and SIV Infection Are Associated with Early Loss of Lung Interstitial CD4+ T Cells and Dissemination of Pulmonary Tuberculosis. Cell Rep. 2019 Feb 5;26(6):1409-1418.e5. doi: 10.1016/j.celrep.2019.01.021. PMID: 30726727; PMCID: PMC6417097.

Flavahan WA, Drier Y, Johnstone SE, Hemming ML, Tarjan DR, Hegazi E, Shareef SJ, Javed NM, Raut CP, Eschle BK, Gokhale PC, Hornick JL, Sicinska ET, Demetri GD, Bernstein BE. Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs. Nature. 2019 Nov;575(7781):229-233. doi: 10.1038/s41586-019-1668-3. Epub 2019 Oct 16. PMID: 31666694; PMCID: PMC6913936.

Subramanian A*, Sidhom EH*, Emani M, Vernon K, Sahakian N, Zhou Y, Kost-Alimova M, Slyper M, Waldman J, Dionne D, Nguyen LT, Weins A, Marshall JL, Rosenblatt-Rosen O, Regev A, Greka A. Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation. Nat Commun. 2019 Nov 29;10(1):5462. doi: 10.1038/s41467-019-13382-0. PMID: 31784515; PMCID: PMC6884507.

Dvela-Levitt M, Kost-Alimova M, Emani M, Kohnert E, Thompson R, Sidhom EH, Rivadeneira A, Sahakian N, Roignot J, Papagregoriou G, Montesinos MS, Clark AR, McKinney D, Gutierrez J, Roth M, Ronco L, Elonga E, Carter TA, Gnirke A, Melanson M, Hartland K, Wieder N, Hsu JC, Deltas C, Hughey R, Bleyer AJ, Kmoch S, Živná M, BareÅ¡ova V, Kota S, Schlondorff J, Heiman M, Alper SL, Wagner F, Weins A, Golub TR, Lander ES, Greka A. Small Molecule Targets TMED9 and Promotes Lysosomal Degradation to Reverse Proteinopathy. Cell. 2019 Jul 25;178(3):521-535.e23. doi: 10.1016/j.cell.2019.07.002. PMID: 31348885.

Sperling AS, Burgess M, Keshishian H, Gasser JA, Bhatt S, Jan M, Słabicki M, Sellar RS, Fink EC, Miller PG, Liddicoat BJ, Sievers QL, Sharma R, Adams DN, Olesinski EA, Fulciniti M, Udeshi ND, Kuhn E, Letai A, Munshi NC, Carr SA, Ebert BL. Patterns of substrate affinity, competition, and degradation kinetics underlie biological activity of thalidomide analogs. Blood. 2019 Jul 11;134(2):160-170. doi: 10.1182/blood.2019000789. Epub 2019 May 1. PMID: 31043423; PMCID: PMC6624968.

Starkweather,C.K., Uchida,N.. (2019). Dopamine reward prediction errors: the interplay between experiments and theory In Gazzaniga,M. (Ed.), The Cognitive Neurosciences, 6th edition (pp. 577-588). Cambridge: MIT Press.

Schwartz AL, Basilico MF, Friedman JL. Lactates and Local Knowledge - A Parable of Teamwork. N Engl J Med. 2019 Apr 11;380(15):1392-1393. doi: 10.1056/NEJMp1815228. PubMed PMID: 30970185.

Beaulieu-Laroche L, Toloza EHS, Brown NJ, Harnett MT. Widespread and Highly Correlated Somato-dendritic Activity in Cortical Layer 5 Neurons. Neuron. 2019 Jul 17;103(2):235-241.e4. doi: 10.1016/j.neuron.2019.05.014. Epub 2019 Jun 6. PMID: 31178115; PMCID: PMC6639136.

Shen K, Valenstein ML, Gu X, Sabatini DM. Arg-78 of Nprl2 catalyzes GATOR1-stimulated GTP hydrolysis by the Rag GTPases. J Biol Chem. 2019 Feb 22;294(8):2970-2975. doi: 10.1074/jbc.AC119.007382. Epub 2019 Jan 16. PubMed PMID: 30651352; PubMed Central PMCID: PMC6393612.

Young JG, Vatsa R, Murray EJ, Hernán MA. Interval-cohort designs and bias in the estimation of per-protocol effects: a simulation study. Trials. 2019 Sep 5;20(1):552. doi: 10.1186/s13063-019-3577-z. PMID: 31488202; PMCID: PMC6729016.

Kotliar D*, Veres A*, Nagy MA, Tabrizi S, Hodis E, Melton DA, Sabeti PC. Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq. Elife. 2019 Jul 8;8:e43803. doi: 10.7554/eLife.43803. PMID: 31282856; PMCID: PMC6639075.

Taylor JL, Debost JPG, Morton SU, Wigdor EM, Heyne HO, Lal D, Howrigan DP, Bloemendal A, Larsen JT, Kosmicki JA, Weiner DJ, Homsy J, Seidman JG, Seidman CE, Agerbo E, McGrath JJ, Mortensen PB, Petersen L, Daly MJ, Robinson EB. Paternal-age-related de novo mutations and risk for five disorders. Nat Commun. 2019 Jul 10;10(1):3043. doi: 10.1038/s41467-019-11039-6. PMID: 31292440; PMCID: PMC6620346.

Miller BC, Sen DR, Al Abosy R, Bi K, Virkud YV, LaFleur MW, Yates KB, Lako A, Felt K, Naik GS, Manos M, Gjini E, Kuchroo JR, Ishizuka JJ, Collier JL, Griffin GK, Maleri S, Comstock DE, Weiss SA, Brown FD, Panda A, Zimmer MD, Manguso RT, Hodi FS, Rodig SJ, Sharpe AH, Haining WN. Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade. Nat Immunol. 2019 Mar;20(3):326-336. doi: 10.1038/s41590-019-0312-6. Epub 2019 Feb 18. Erratum in: Nat Immunol. 2019 Nov;20(11):1556. PMID: 30778252; PMCID: PMC6673650.

Miller BC, Sen DR, Al Abosy R, Bi K, Virkud YV, LaFleur MW, Yates KB, Lako A, Felt K, Naik GS, Manos M, Gjini E, Kuchroo JR, Ishizuka JJ, Collier JL, Griffin GK, Maleri S, Comstock DE, Weiss SA, Brown FD, Panda A, Zimmer MD, Manguso RT, Hodi FS, Rodig SJ, Sharpe AH, Haining WN. Author Correction: Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade. Nat Immunol. 2019 Nov;20(11):1556. doi: 10.1038/s41590-019-0528-5. Erratum for: Nat Immunol. 2019 Mar;20(3):326-336. PMID: 31582823.

LaFleur MW, Nguyen TH, Coxe MA, Yates KB, Trombley JD, Weiss SA, Brown FD, Gillis JE, Coxe DJ, Doench JG, Haining WN, Sharpe AH. A CRISPR-Cas9 delivery system for in vivo screening of genes in the immune system. Nat Commun. 2019 Apr 10;10(1):1668. doi: 10.1038/s41467-019-09656-2. PubMed PMID: 30971695; PubMed Central PMCID: PMC6458184.

Hwang WL, Wolfson RL, Niemierko A, Marcus KJ, DuBois SG, Haas-Kogan D. Clinical Impact of Tumor Mutational Burden in Neuroblastoma. J Natl Cancer Inst. 2019 Jul 1;111(7):695-699. doi: 10.1093/jnci/djy157. PMID: 30307503; PMCID: PMC6624164.

Yan WX, Hunnewell P, Alfonse LE, Carte JM, Keston-Smith E, Sothiselvam S, Garrity AJ, Chong S, Makarova KS, Koonin EV, Cheng DR, Scott DA. Functionally diverse type V CRISPR-Cas systems. Science. 2019 Jan 4;363(6422):88-91. doi: 10.1126/science.aav7271. Epub 2018 Dec 6. PMID: 3052307

Faure G, Shmakov SA, Yan WX, Cheng DR, Scott DA, Peters JE, Makarova KS, Koonin EV. CRISPR-Cas in mobile genetic elements: counter-defence and beyond. Nat Rev Microbiol. 2019 Aug;17(8):513-525. doi: 10.1038/s41579-019-0204-7. PMID: 31165781.7.

Ma L, Dichwalkar T, Chang JYH, Cossette B, Garafola D, Zhang AQ, Fichter M, Wang C, Liang S, Silva M, Kumari S, Mehta NK, Abraham W, Thai N, Li N, Wittrup KD, Irvine DJ. Enhanced CAR-T cell activity against solid tumors by vaccine boosting through the chimeric receptor. Science. 2019 Jul 12;365(6449):162-168. doi: 10.1126/science.aav8692. PubMed PMID: 31296767.

Zhang Z, Gothe F, Pennamen P, James JR, McDonald D, Mata CP, Modis Y, Alazami AM, Acres M, Haller W, Bowen C, Döffinger R, Sinclair J, Brothers S, Zhang Y, Matthews HF, Naudion S, Pelluard F, Alajlan H, Yamazaki Y, Notarangelo LD, Thaventhiran JE, Engelhardt KR, Al-Mousa H, Hambleton S, Rooryck C, Smith KGC, Lenardo MJ. Human interleukin-2 receptor β mutations associated with defects in immunity and peripheral tolerance. J Exp Med. 2019 Jun 3;216(6):1311-1327. doi: 10.1084/jem.20182304. Epub 2019 Apr 30. PMID: 31040185; PMCID: PMC6547869.

Ziegler CGK, Kim J, Piersanti K, Oyler-Yaniv A, Argyropoulos KV, van den Brink MRM, Palomba ML, Altan-Bonnet N, Altan-Bonnet G. Constitutive Activation of the B Cell Receptor Underlies Dysfunctional Signaling in Chronic Lymphocytic Leukemia. Cell Rep. 2019 Jul 23;28(4):923-937.e3. doi: 10.1016/j.celrep.2019.06.069. PMID: 31340154.

 

2018

Myhrvold C, Freije CA, Gootenberg JS, Abudayyeh OO, Metsky HC, Durbin AF, Kellner MJ, Tan AL, Paul LM, Parham LA, Garcia KF, Barnes KG, Chak B, Mondini A,  Nogueira ML, Isern S, Michael SF, Lorenzana I, Yozwiak NL, MacInnis BL, Bosch I,  Gehrke L, Zhang F, Sabeti PC. Field-deployable viral diagnostics using CRISPR-Cas13. Science. 2018 Apr 27;360(6387):444-448. doi: 10.1126/science.aas8836. PubMed PMID: 29700266.

Gootenberg JS, Abudayyeh OO, Kellner MJ, Joung J, Collins JJ, Zhang F. Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6. Science. 2018 Apr 27;360(6387):439-444. doi: 10.1126/science.aaq0179. Epub  2018 Feb 15. PubMed PMID: 29449508; PubMed Central PMCID: PMC5961727.

Nishimasu H, Shi X, Ishiguro S, Gao L, Hirano S, Okazaki S, Noda T, Abudayyeh OO, Gootenberg JS, Mori H, Oura S, Holmes B, Tanaka M, Seki M, Hirano H, Aburatani H, Ishitani R, Ikawa M, Yachie N, Zhang F, Nureki O. Engineered CRISPR-Cas9 nuclease with expanded targeting space. Science. 2018 Sep 21;361(6408):1259-1262. doi: 10.1126/science.aas9129. Epub 2018 Aug 30. PubMed PMID: 30166441

Sharma A, Toepfer CN, Ward T, Wasson L, Agarwal R, Conner DA, Hu JH, Seidman CE. CRISPR/Cas9-Mediated Fluorescent Tagging of Endogenous Proteins in Human Pluripotent Stem Cells. Curr Protoc Hum Genet. 2018 Jan 24;96:21.11.1-21.11.20. doi: 10.1002/cphg.52. PubMed PMID: 29364519; PubMed Central PMCID: PMC5785097.

Berne C, Ellison CK, Agarwal R, Severin GB, Fiebig A, Morton RI 3rd, Waters CM, Brun YV. Feedback regulation of Caulobacter crescentus holdfast synthesis by flagellum assembly via the holdfast inhibitor HfiA. Mol Microbiol. 2018 Oct;110(2):219-238. doi: 10.1111/mmi.14099. Epub 2018 Oct 5. PubMed PMID: 30079982; PubMed Central PMCID: PMC6195837.

Cai T, Zhang Y, Ho YL, Link N, Sun J, Huang J, Cai TA, Damrauer S, Ahuja Y, Honerlaw J, Huang J, Costa L, Schubert P, Hong C, Gagnon D, Sun YV, Gaziano JM, Wilson P, Cho K, Tsao P, O'Donnell CJ, Liao KP; VA Million Veteran Program. Association of Interleukin 6 Receptor Variant With Cardiovascular Disease Effects of Interleukin 6 Receptor Blocking Therapy: A Phenome-Wide Association Study. JAMA Cardiol. 2018 Sep 1;3(9):849-857. doi: 10.1001/jamacardio.2018.2287. PubMed PMID: 30090940.

Short FL, Akusobi C, Broadhurst WR, Salmond GPC. The bacterial Type III toxin-antitoxin system, ToxIN, is a dynamic protein-RNA complex with stability-dependent antiviral abortive infection activity. Sci Rep. 2018 Jan 17;8(1):1013. doi: 10.1038/s41598-017-18696-x. PubMed PMID: 29343718; PubMed Central PMCID: PMC5772629.

Allsop SA, Wichmann R, Mills F, Burgos-Robles A, Chang CJ, Felix-Ortiz AC, Vienne A, Beyeler A, Izadmehr EM, Glober G, Cum MI, Stergiadou J, Anandalingam KK, Farris K, Namburi P, Leppla CA, Weddington JC, Nieh EH, Smith AC, Ba D, Brown EN, Tye KM. Corticoamygdala Transfer of Socially Derived Information Gates Observational Learning. Cell. 2018 May 31;173(6):1329-1342.e18. doi: 10.1016/j.cell.2018.04.004. Epub 2018 May 3. PubMed PMID: 29731170.

Zhang Y, Malem-Shinitski N, Allsop SA, M Tye K, Ba D. Estimating a Separably Markov Random Field from Binary Observations. Neural Comput. 2018 Apr;30(4):1046-1079. doi: 10.1162/neco_a_01059. Epub 2018 Jan 30. PubMed PMID: 29381446.

Matthew Basilico, Abhiram Bhashyam, Emma Harrington, Marilyn Heng. Initial Opioid Supply Influences Long-Term Use and Doctor Shopping: An Instrumental Variables Approach, American College of Surgeons Clinical Congress. Boston, MA October 2018. Winner: Excellence in Research Award (Health Policy).

Matthew Basilico, Abhiram Bhashyam, Marilyn Heng. Racial bias in initial opioid prescribing for orthopaedic trauma patients. Boston, MA October 2018.

Abhiram Bhashyam, Matthew Basilico, Michael Weaver, Mitchel Harris, Marilyn Heng. An analysis of initial post-operative opioid prescribing patterns in orthopaedic trauma and a technique to determine prescribing guidelines. American Academy of Orthopaedic Surgeons Annual Meeting. 2018

Matthew Basilico, Abhiram R. Bhashyam, Mitchel Harris, Marilyn Heng. Prescription opioid type is not associated with increased risk of long-term use in opiate naïve patients after orthopaedic surgery. Accepted ASSH 2018.

Bhashyam AR, Basilico M, Weaver MJ, Harris MB, Heng M. Using historical variation in opioid prescribing immediately after fracture surgery to guide maximum initial prescriptions. J Orthop Trauma. 2018 Dec 12. doi: 10.1097/BOT.0000000000001392. [Epub ahead of print] PubMed PMID: 30570619.

Basilico M, Bhashyam AR, Harris MB, Heng M. Prescription Opioid Type and the Likelihood of Prolonged Opioid Use After Orthopaedic Surgery. J Am Acad Orthop Surg. 2018 Oct 4. doi: 10.5435/JAAOS-D-17-00663. [Epub ahead of print] PubMed PMID: 30289795.

Baum, M. L., Savulescu, J., Singh, I. in press. Chapter 5: A New Ethics For 21st Century Psychiatry. In: Geddes, J., Andreasen, N., and Goodwin, G. (eds). New Oxford Textbook of Psychiatry (3rd edition).

Saunders A, Macosko EZ, Wysoker A, Goldman M, Krienen FM, de Rivera H, Bien E,, Baum M, Bortolin L, Wang S, Goeva A, Nemesh J, Kamitaki N, Brumbaugh S, Kulp D, McCarroll SA. Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain. Cell. 2018 Aug 9;174(4):1015-1030.e16. doi: 10.1016/j.cell.2018.07.028. PubMed PMID: 30096299; PubMed Central PMCID:
PMC6447408.

Bodnar NO, Kim KH, Ji Z, Wales TE, Svetlov V, Nudler E, Engen JR, Walz T, Rapoport TA. Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4. Nat Struct Mol Biol. 2018 Jul;25(7):616-622. doi: 10.1038/s41594-018-0085-x. Epub 2018 Jul 2. PubMed PMID: 29967539; PubMed Central PMCID: PMC6044470.

Schmalzer, Sigrid, Daniel S. Chard, and Alyssa Botelho, eds. Science for the People: Documents from America's Movement of Radical Scientists, 1969-1989. Amherst, MA: University of Massachusetts Press, 2018.

Botelho, Alyssa. "Biology and Medicine." In Science for the People: Documents from America's Movement of Radical Scientists, 1969-1989, edited by Sigrid Schmalzer, Daniel S. Chard, and Alyssa Botelho. Amherst, MA: University of Massachusetts Press, 2018.

Botelho, Alyssa. "Race and Gender." In Science for the People: Documents from America's Movement of Radical Scientists, 1969-1989, edited by Sigrid Schmalzer, Daniel S. Chard, and Alyssa Botelho. Amherst, MA: University of Massachusetts Press, 2018.

Pan J, Meyers RM, Michel BC, Mashtalir N, Sizemore AE, Wells JN, Cassel SH, Vazquez F, Weir BA, Hahn WC, Marsh JA, Tsherniak A, Kadoch C. Interrogation of Mammalian Protein Complex Structure, Function, and Membership Using Genome-Scale  Fitness Screens. Cell Syst. 2018 May 23;6(5):555-568.e7. doi: 10.1016/j.cels.2018.04.011. Epub 2018 May 16. PubMed PMID: 29778836.

Mashtalir N, D'Avino AR, Michel BC, Luo J, Pan J, Otto JE, Zullow HJ, McKenzie ZM, Kubiak RL, St Pierre R, Valencia AM, Poynter SJ, Cassel SH, Ranish JA, Kadoch C. Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes. Cell. 2018 Oct 18. pii: S0092-8674(18)31244-3. doi: 10.1016/j.cell.2018.09.032. [Epub ahead of print] PubMed PMID: 30343899.

Brown JM, Campbell JP, Beers A, Chang K, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Chiang MF; Imaging and Informatics in Retinopathy of Prematurity (i-ROP) Research Consortium. Automated Diagnosis of Plus Disease in Retinopathy of Prematurity Using Deep Convolutional Neural Networks. JAMA Ophthalmol. 2018 May 2. doi: 10.1001/jamaophthalmol.2018.1934. [Epub ahead of print] PubMed PMID: 29801159.

Chang K, Balachandar N, Lam C, Yi D, Brown J, Beers A, Rosen B, Rubin DL, Kalpathy-Cramer J. Distributed deep learning networks among institutions for medical imaging. J Am Med Inform Assoc. 2018 Mar 29. doi: 10.1093/jamia/ocy017. [Epub ahead of print] PubMed PMID: 29617797.

Tang L, Deng L, Bai HX, Sun J, Neale N, Wu J, Wang Y, Chang K, Huang RY, Zhang PJ, Li X, Xiao B, Cao Y, Tao Y, Yang L. Reduced expression of DNA repair genes and chemosensitivity in 1p19q codeleted lower-grade gliomas. J Neurooncol. 2018 Jun 19. doi: 10.1007/s11060-018-2915-4. [Epub ahead of print] PubMed PMID: 29923053

Winzeck S, Hakim A, McKinley R, Pinto JAADSR, Alves V, Silva C, Pisov M, Krivov E, Belyaev M, Monteiro M, Oliveira A, Choi Y, Paik MC, Kwon Y, Lee H, Kim BJ, Won JH, Islam M, Ren H, Robben D, Suetens P, Gong E, Niu Y, Xu J, Pauly JM, Lucas C, Heinrich MP, Rivera LC, Castillo LS, Daza LA, Beers AL, Arbelaezs P, Maier O, Chang K, Brown JM, Kalpathy-Cramer J, Zaharchuk G, Wiest R, Reyes M. ISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI. Front Neurol. 2018 Sep 13;9:679. doi: 10.3389/fneur.2018.00679. eCollection 2018. PubMed PMID: 30271370; PubMed Central PMCID: PMC6146088.

Tyssowski KM, DeStefino NR, Cho JH, Dunn CJ, Poston RG, Carty CE, Jones RD, Chang SM, Romeo P, Wurzelmann MK, Ward JM, Andermann ML, Saha RN, Dudek SM, Gray  JM. Different Neuronal Activity Patterns Induce Different Gene Expression Programs. Neuron. 2018 May 2;98(3):530-546.e11. doi: 10.1016/j.neuron.2018.04.001. Epub 2018 Apr 19. PubMed PMID: 29681534; PubMed Central PMCID: PMC5934296.

Lima Queiroz A, Zhang B, Comstock DE, Hao Y, Eriksson M, Hydbring P, Vakifahmetoglu-Norberg H, Norberg E. miR-126-5p targets Malate Dehydrogenase 1 in non-small cell lung carcinomas. Biochem Biophys Res Commun. 2018 May 5;499(2):314-320. doi: 10.1016/j.bbrc.2018.03.154. Epub 2018 Mar 26. PubMed PMID: 29574159.

DiRisio AC, Muskens IS, Cote DJ, Babu M, Gormley WB, Smith TR, Moojen WA, Broekman ML. Oversight and Ethical Regulation of Conflicts of Interest in Neurosurgery in the United States. Neurosurgery. 2018 May 30. doi: 10.1093/neuros/nyy227. [Epub ahead of print] PubMed PMID: 29850841.

Zaidi HA, Penn DL, Cote DJ, Laws ER Jr. Root cause analysis of diagnostic and  surgical failures in the treatment of suspected Cushing's disease. J Clin Neurosci. 2018 Jul;53:153-159. doi: 10.1016/j.jocn.2018.04.055. Epub 2018 Apr 30. PubMed PMID: 29716804.

Martin E, Muskens IS, Senders JT, Cote DJ, Smith TR, Broekman MLD. A nationwide analysis of 30-day adverse events, unplanned readmission, and length of hospital stay after peripheral nerve surgery in extremities and the brachial plexus. Microsurgery. 2018 Apr 15. doi: 10.1002/micr.30330. PubMed PMID: 29656387.

Zaki MM, Cote DJ, Muskens IS, Smith TR, Broekman ML. Defining Innovation in Neurosurgery: Results from an International Survey. World Neurosurg. 2018 Jun;114:e1038-e1048. doi: 10.1016/j.wneu.2018.03.142. Epub 2018 Mar 29. PubMed PMID: 29604357.

Alotaibi NM, Noormohamed N, Cote DJ, Alharthi S, Doucette J, Zaidi HA, Mekary  RA, Smith TR. Physiologic Growth Hormone-Replacement Therapy and Craniopharyngioma Recurrence in Pediatric Patients: A Meta-Analysis. World Neurosurg. 2018 Jan;109:487-496.e1. doi: 10.1016/j.wneu.2017.09.164. Epub 2017 Oct 4. Review. PubMed PMID: 28987837; PubMed Central PMCID: PMC5729106.

Senders JT, Goldhaber NH, Cote DJ, Muskens IS, Dawood HY, De Vos FYFL, Gormley WB, Smith TR, Broekman MLD. Venous thromboembolism and intracranial hemorrhage after craniotomy for primary malignant brain tumors: a National Surgical Quality  Improvement Program analysis. J Neurooncol. 2018 Jan;136(1):135-145. doi: 10.1007/s11060-017-2631-5. Epub 2017 Oct 16. PubMed PMID: 29039075; PubMed Central PMCID: PMC5754452.

Burke WT, Cote DJ, Iuliano SI, Zaidi HA, Laws ER. A practical method for prevention of readmission for symptomatic hyponatremia following transsphenoidal surgery. Pituitary. 2018 Feb;21(1):25-31. doi: 10.1007/s11102-017-0843-5. PubMed  PMID: 29075986.

Almutairi RD, Muskens IS, Cote DJ, Dijkman MD, Kavouridis VK, Crocker E, Ghazawi K, Broekman MLD, Smith TR, Mekary RA, Zaidi HA. Gross total resection of  pituitary adenomas after endoscopic vs. microscopic transsphenoidal surgery: a meta-analysis. Acta Neurochir (Wien). 2018 Jan 6. doi: 10.1007/s00701-017-3438-z. [Epub ahead of print] Review. PubMed PMID: 29307020.

Altuwaijri N, Cote DJ, Lamba N, Albenayan W, Ren SP, Zaghloul I, Doucette J, Zaidi HA, Mekary RA, Smith TR. Headache Resolution After Rathke Cleft Cyst Resection: A Meta-Analysis. World Neurosurg. 2018 Jan 5. pii: S1878-8750(18)30025-1. doi: 10.1016/j.wneu.2017.12.170. PubMed PMID: 29309984.

Alreshidi M, Cote DJ, Dasenbrock HH, Acosta M, Can A, Doucette J, Simjian T, Hulou MM, Wheeler LA, Huang K, Zaidi HA, Du R, Aziz-Sultan MA, Mekary RA, Smith TR. Coiling Versus Microsurgical Clipping in the Treatment of Unruptured Middle Cerebral Artery Aneurysms: A Meta-Analysis. Neurosurgery. 2018 Feb 9. doi: 10.1093/neuros/nyx623. PubMed PMID: 29438551.

Senders JT, Muskens IS, Cote DJ, Goldhaber NH, Dawood HY, Gormley WB, Broekman MLD, Smith TR. Thirty-Day Outcomes After Craniotomy for Primary Malignant Brain Tumors: A National Surgical Quality Improvement Program Analysis. Neurosurgery. 2018 Feb 22. doi: 10.1093/neuros/nyy001. PubMed PMID: 29481613.

Ostrom Q*, Cote DJ*, Ascha M, Kruchko C, Barnholtz-Sloan JS. "Patterns of adult glioma incidence and survival by race and ethnicity in the United States from 2000-2014." JAMA Oncology. 2018 Jun. PMID: 29931168; PubMed Central PMCID: PMC6143018.

Cote DJ, Downer MK, Smith TR, Smith-Warner SA, Egan KM, Stampfer MJ. Height, waist circumference, body mass index, and body somatotype across the life course  and risk of glioma. Cancer Causes Control. 2018 Aug;29(8):707-719. doi: 10.1007/s10552-018-1052-x. Epub 2018 Jun 26. PubMed PMID: 29943102.

Gurry T; HST Microbiome Consortium*, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. *Collaborators: Dannenberg PH, Finlayson SG, Hughes TK, Macias-Trevino C, Owusu-Boaitey K, Shomorony A, Tuang SL, Valenstein ML, Wang KK, Wu MP, Zack TI. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. PubMed PMID: 30139999; PubMed Central PMCID: PMC6107591

Tyssowski KM, DeStefino NR, Cho JH, Dunn CJ, Poston RG, Carty CE, Jones RD, Chang SM, Romeo P, Wurzelmann MK, Ward JM, Andermann ML, Saha RN, Dudek SM, Gray  JM. Different Neuronal Activity Patterns Induce Different Gene Expression Programs. Neuron. 2018 May 2;98(3):530-546.e11. doi: 10.1016/j.neuron.2018.04.001. Epub 2018 Apr 19. PubMed PMID: 29681534; PubMed Central PMCID: PMC5934296.

Fan X, Xie B, Zou J, Luo J, Qin Z, D'Gama AM, Shi J, Yi S, Yang Q, Wang J, Luo S, Chen S, Agrawal PB, Li Q, Shen Y. Novel ETFDH mutations in four cases of riboflavin responsive multiple acyl-CoA dehydrogenase deficiency. Mol Genet Metab Rep. 2018 Jun 11;16:15-19. doi: 10.1016/j.ymgmr.2018.05.007. eCollection 2018 Sep. PubMed PMID: 29988809; PubMed Central PMCID: PMC6031868.

Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, Woloszynek S, Carpenter AE, Shrikumar A, Xu J, Cofer EM, Lavender CA, Turaga SC, Alexandari AM, Lu Z, Harris DJ, DeCaprio D, Qi Y, Kundaje A, Peng  Y, Wiley LK, Segler MHS, Boca SM, Swamidass SJ, Huang A, Gitter A, Greene CS. Opportunities and obstacles for deep learning in biology and medicine. J R Soc Interface. 2018 Apr;15(141). pii: 20170387. doi: 10.1098/rsif.2017.0387. Review.  PubMed PMID: 29618526; PubMed Central PMCID: PMC5938574.

Wutz A, Loonis R, Roy JE, Donoghue JA, Miller EK. Different Levels of Category Abstraction by Different Dynamics in Different Prefrontal Areas. Neuron. 2018 Feb 7;97(3):716-726.e8. doi: 10.1016/j.neuron.2018.01.009. Epub 2018 Jan 27. PubMed PMID: 29395915.

Dosumu-Johnson RT, Cocoran AE, Chang Y, Nattie E, Dymecki SM. Acute perturbation of Pet1-neuron activity in neonatal mice impairs cardiorespiratory homeostatic recovery. Elife. 2018 Oct 23;7. pii: e37857. doi: 10.7554/eLife.37857. PubMed PMID: 30350781.

Drosu NC, Edelman ER, Housman DE. Could antiretrovirals be treating EBV in MS? A case report. Mult Scler Relat Disord. 2018 May;22:19-21. doi: 10.1016/j.msard.2018.02.029. Epub 2018 Feb 27. PubMed PMID: 29510325.

Legler S, Celano CM, Amador A, Novis A, Ebrahim S, Huffman JC. Development and Theoretical Approach to an Adaptive Text Message Program to Promote Well-Being and Health Behaviors in Primary Care Patients. Prim Care Companion CNS Disord. 2018 Oct 25;20(5). pii: 18br02353. doi: 10.4088/PCC.18br02353. PubMed PMID: 30444962.

Jing J, d'Angremont E, Zafar S, Rosenthal ES, Tabaeizadeh M, Ebrahim S, Dauwels J, Westover MB. Rapid Annotation of Seizures and Interictal-ictal Continuum EEG Patterns. Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:3394-3397. doi: 10.1109/EMBC.2018.8513059. PubMed PMID: 30441116; PubMed Central PMCID: PMC6776236.

Wolfe JM, Fadzen CM, Choo ZN, Holden RL, Yao M, Hanson GJ, Pentelute BL. Machine Learning To Predict Cell-Penetrating Peptides for Antisense Delivery. ACS Cent Sci. 2018 Apr 25;4(4):512-520. doi: 10.1021/acscentsci.8b00098. Epub 2018 Apr 5. PubMed PMID: 29721534; PubMed Central PMCID: PMC5920612.

Wolfe JM, Fadzen CM, Holden RL, Yao M, Hanson GJ, Pentelute BL. Perfluoroaryl  Bicyclic Cell-Penetrating Peptides for Delivery of Antisense Oligonucleotides. Angew Chem Int Ed Engl. 2018 Apr 16;57(17):4756-4759. doi: 10.1002/anie.201801167. Epub 2018 Mar 14. PubMed PMID: 29479836.

Donovan KA, An J, Nowak RP, Yuan JC, Fink EC, Berry BC, Ebert BL, Fischer ES.  Thalidomide promotes degradation of SALL4, a transcription factor implicated in Duane Radial Ray syndrome. Elife. 2018 Aug 1;7. pii: e38430. doi: 10.7554/eLife.38430. PubMed PMID: 30067223; PubMed Central PMCID: PMC6156078.

Fink EC, McConkey M, Adams DN, Haldar SD, Kennedy JA, Guirguis AA, Udeshi ND,  Mani DR, Chen M, Liddicoat B, Svinkina T, Nguyen AT, Carr SA, Ebert BL. Crbn (I391V) is sufficient to confer in vivo sensitivity to thalidomide and its derivatives in mice. Blood. 2018 Oct 4;132(14):1535-1544. doi: 10.1182/blood-2018-05-852798. Epub 2018 Jul 31. PubMed PMID: 30064974; PubMed Central PMCID: PMC6172563.

Gurry T; HST Microbiome Consortium*, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. *Collaborators: Dannenberg PH, Finlayson SG, Hughes TK, Macias-Trevino C, Owusu-Boaitey K, Shomorony A, Tuang SL, Valenstein ML, Wang KK, Wu MP, Zack TI. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. PubMed PMID: 30139999; PubMed Central PMCID: PMC6107591

Finlayson SG, Bowers JD, Ito J, Zittrain JL, Beam AL, Kohane IS. Adversarial attacks on medical machine learning. Science. 2019 Mar 22;363(6433):1287-1289. doi: 10.1126/science.aaw4399. PubMed PMID: 30898923.

Li J, Choi PS, Chaffer CL, Labella K, Hwang JH, Giacomelli AO, Kim JW, Ilic N, Doench JG, Ly SH, Dai C, Hagel K, Hong AL, Gjoerup O, Goel S, Ge JY, Root DE, Zhao JJ, Brooks AN, Weinberg RA, Hahn WC. An alternative splicing switch in FLNB  promotes the mesenchymal cell state in human breast cancer. Elife. 2018 Jul 30;7. pii: e37184. doi: 10.7554/eLife.37184. PubMed PMID: 30059005; PubMed Central PMCID: PMC6103745.

Anahtar MN, Gootenberg DB, Mitchell CM, Kwon DS. Cervicovaginal Microbiota and Reproductive Health: The Virtue of Simplicity. Cell Host Microbe. 2018 Feb 14;23(2):159-168. doi: 10.1016/j.chom.2018.01.013. Review. PubMed PMID: 29447695

Grossman SR, Engreitz J, Ray JP, Nguyen TH, Hacohen N, Lander ES. Positional specificity of different transcription factor classes within enhancers. Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):E7222-E7230. doi: 10.1073/pnas.1804663115. Epub 2018 Jul 9. PMID: 29987030

Reshef YA, Finucane HK, Kelley DR, Gusev A, Kotliar D, Ulirsch JC, Hormozdiari F, Nasser J, O'Connor L, van de Geijn B, Loh PR, Grossman SR, Bhatia G, Gazal S,  Palamara PF, Pinello L, Patterson N, Adams RP, Price AL. Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk. Nat Genet. 2018 Oct;50(10):1483-1493. doi: 10.1038/s41588-018-0196-7. Epub 2018 Sep 3. PubMed PMID: 30177862; PubMed Central PMCID: PMC6202062.

Peter F. Martelli, Tuna Cem Hayirli, (2018) "Three perspectives on evidence-based management: rank, fit, variety", Management Decision, Vol. 56 Issue: 10, pp.2085-2100, https://doi.org/10.1108/MD-09-2017-0920

Giacomelli AO, Yang X, Lintner RE, McFarland JM, Duby M, Kim J, Howard TP, Takeda DY, Ly SH, Kim E, Gannon HS, Hurhula B, Sharpe T, Goodale A, Fritchman B,  Steelman S, Vazquez F, Tsherniak A, Aguirre AJ, Doench JG, Piccioni F, Roberts CWM, Meyerson M, Getz G, Johannessen CM, Root DE, Hahn WC. Mutational processes shape the landscape of TP53 mutations in human cancer. Nat Genet. 2018 Oct;50(10):1381-1387. doi: 10.1038/s41588-018-0204-y. Epub 2018 Sep 17. PubMed PMID: 30224644; PubMed Central PMCID: PMC6168352.

Gurry T; HST Microbiome Consortium*, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. *Collaborators: Dannenberg PH, Finlayson SG, Hughes TK, Macias-Trevino C, Owusu-Boaitey K, Shomorony A, Tuang SL, Valenstein ML, Wang KK, Wu MP, Zack TI. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. PubMed PMID: 30139999; PubMed Central PMCID: PMC6107591

Ordovas-Montanes J, Dwyer DF, Nyquist SK, Buchheit KM, Vukovic M, Deb C, Wadsworth MH 2nd, Hughes TK, Kazer SW, Yoshimoto E, Cahill KN, Bhattacharyya N, Katz HR, Berger B, Laidlaw TM, Boyce JA, Barrett NA, Shalek AK. Allergic inflammatory memory in human respiratory epithelial progenitor cells. Nature. 2018 Aug;560(7720):649-654. doi: 10.1038/s41586-018-0449-8. Epub 2018 Aug 22. PubMed PMID: 30135581; PubMed Central PMCID: PMC6133715.

Mead BE, Ordovas-Montanes J, Braun AP, Levy LE, Bhargava P, Szucs MJ, Ammendolia DA, MacMullan MA, Yin X, Hughes TK, Wadsworth MH 2nd, Ahmad R, Rakoff-Nahoum S, Carr SA, Langer R, Collins JJ, Shalek AK, Karp JM. Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types. BMC Biol. 2018 Jun 5;16(1):62. doi: 10.1186/s12915-018-0527-2. PubMed PMID: 29871632; PubMed Central PMCID: PMC5989470.

Silver JN, Ashbaugh CD, Miles JJ, Wu H, Marecki GT, Hwang JK, Jiao JA, Abrams  M, Sullivan EJ, Wesemann DR. Deployment of Transchromosomal Bovine for Personalized Antimicrobial Therapy. Clin Infect Dis. 2018 Mar 19;66(7):1116-1119. doi: 10.1093/cid/cix977. PubMed PMID: 29272362.

Jayaraman D, Bae BI, Walsh CA. The Genetics of Primary Microcephaly. Annu Rev  Genomics Hum Genet. 2018 Aug 31;19:177-200. doi:10.1146/annurev-genom-083117-021441. Epub 2018 May 23. Review. PubMed PMID: 29799801

Stouffs K, Stergachis AB, Vanderhasselt T, Dica A, Janssens S, Vandervore L, Gheldof A, Bodamer O, Keymolen K, Seneca S, Liebaers I, Jayaraman D, Hill HE, Partlow JN, Walsh CA, Jansen AC. Expanding the clinical spectrum of biallelic ZNF335 variants. Clin Genet. 2018 Aug;94(2):246-251. doi: 10.1111/cge.13260. Epub 2018 May 3. PMID: 29652087; PMCID: PMC6361164.

Kalinich M, Haber DA. Cancer detection: Seeking signals in blood. Science. 2018 Feb 23;359(6378):866-867. doi: 10.1126/science.aas9102. PubMed PMID: 29472467.

Kwan TT, Bardia A, Spring LM, Giobbie-Hurder A, Kalinich M, Dubash T, Sundaresan T, Hong X, LiCausi JA, Ho U, Silva EJ, Wittner BS, Sequist LV, KapurR, Miyamoto DT, Toner M, Haber DA, Maheswaran S. A Digital RNA Signature of Circulating Tumor Cells Predicting Early Therapeutic Response in Localized and Metastatic Breast Cancer. Cancer Discov. 2018 Oct;8(10):1286-1299. doi: 10.1158/2159-8290.CD-18-0432. Epub 2018 Aug 13. PubMed PMID: 30104333; PubMed Central PMCID: PMC6170694.

Hong X, Sullivan RJ, Kalinich M, Kwan TT, Giobbie-Hurder A, Pan S, LiCausi JA, Milner JD, Nieman LT, Wittner BS, Ho U, Chen T, Kapur R, Lawrence DP, Flaherty KT, Sequist LV, Ramaswamy S, Miyamoto DT, Lawrence M, Toner M, Isselbacher KJ, Maheswaran S, Haber DA. Molecular signatures of circulating melanoma cells for monitoring early response to immune checkpoint therapy. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2467-2472. doi: 10.1073/pnas.1719264115. Epub 2018 Feb 16. PubMed PMID: 29453278; PubMed Central PMCID: PMC5877960.

Miyamoto DT, Lee RJ, Kalinich M, LiCausi JA, Zheng Y, Chen T, Milner JD, Emmons E, Ho U, Broderick K, Silva E, Javaid S, Kwan TT, Hong X, Dahl DM, McGovern FJ, Efstathiou JA, Smith MR, Sequist LV, Kapur R, Wu CL, Stott SL, Ting  DT, Giobbie-Hurder A, Toner M, Maheswaran S, Haber DA. An RNA-Based Digital Circulating Tumor Cell Signature Is Predictive of Drug Response and Early Dissemination in Prostate Cancer. Cancer Discov. 2018 Mar;8(3):288-303. doi: 10.1158/2159-8290.CD-16-1406. Epub 2018 Jan 4. PubMed PMID: 29301747.

Bhan I, Mosesso K, Goyal L, Philipp J, Kalinich M, Franses JW, Choz M, Oklu R, Toner M, Maheswaran S, Haber DA, Zhu AX, Chung RT, Aryee M, Ting DT. Detection and Analysis of Circulating Epithelial Cells in Liquid Biopsies From Patients With Liver Disease. Gastroenterology. 2018 Dec;155(6):2016-2018.e11. doi: 10.1053/j.gastro.2018.09.020. Epub 2018 Sep 13. PubMed PMID: 30218669.

Viswanathan SR, Ha G, Hoff AM, Wala JA, Carrot-Zhang J, Whelan CW, Haradhvala  NJ, Freeman SS, Reed SC, Rhoades J, Polak P, Cipicchio M, Wankowicz SA, Wong A, Kamath T, Zhang Z, Gydush GJ, Rotem D; PCF/SU2C International Prostate Cancer Dream Team, Love JC, Getz G, Gabriel S, Zhang CZ, Dehm SM, Nelson PS, Van Allen EM, Choudhury AD, Adalsteinsson VA, Beroukhim R, Taplin ME, Meyerson M. Structural Alterations Driving Castration-Resistant Prostate Cancer Revealed by Linked-Read Genome Sequencing. Cell. 2018 Jul 12;174(2):433-447.e19. doi: 10.1016/j.cell.2018.05.036. Epub 2018 Jun 18. PubMed PMID: 29909985; PubMed Central PMCID: PMC6046279.

Knouse KA, Lopez KE, Bachofner M, Amon A. Chromosome Segregation Fidelity in Epithelia Requires Tissue Architecture. Cell. 2018 Sep 20;175(1):200-211.e13.
doi: 10.1016/j.cell.2018.07.042. Epub 2018 Aug 23. PubMed PMID: 30146160; PubMed Central PMCID: PMC6151153

Lee JJ, Wedow R, Okbay A, Kong E, Maghzian O, Zacher M, Nguyen-Viet TA, Bowers P, Sidorenko J, Karlsson Linnér R, Fontana MA, Kundu T, Lee C, Li H, Li R, Royer  R, Timshel PN, Walters RK, Willoughby EA, Yengo L; 23andMe Research Team; COGENT  (Cognitive Genomics Consortium); Social Science Genetic Association Consortium, Alver M, Bao Y, Clark DW, Day FR, Furlotte NA, Joshi PK, Kemper KE, Kleinman A, Langenberg C, Mägi R, Trampush JW, Verma SS, Wu Y, Lam M, Zhao JH, Zheng Z, Boardman JD, Campbell H, Freese J, Harris KM, Hayward C, Herd P, Kumari M, Lencz  T, Luan J, Malhotra AK, Metspalu A, Milani L, Ong KK, Perry JRB, Porteous DJ, Ritchie MD, Smart MC, Smith BH, Tung JY, Wareham NJ, Wilson JF, Beauchamp JP, Conley DC, Esko T, Lehrer SF, Magnusson PKE, Oskarsson S, Pers TH, Robinson MR, Thom K, Watson C, Chabris CF, Meyer MN, Laibson DI, Yang J, Johannesson M, Koellinger PD, Turley P, Visscher PM, Benjamin DJ, Cesarini D. Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals. Nat Genet. 2018 Aug;50(8):1112-1121. doi:  10.1038/s41588-018-0147-3. Epub 2018 Jul 23. PubMed PMID: 30038396.

Siddle KJ, Eromon P, Barnes KG, Mehta S, Oguzie JU, Odia I, Schaffner SF, Winnicki SM, Shah RR, Qu J, Wohl S, Brehio P, Iruolagbe C, Aiyepada J, Uyigue E,  Akhilomen P, Okonofua G, Ye S, Kayode T, Ajogbasile F, Uwanibe J, Gaye A, Momoh M, Chak B, Kotliar D, Carter A, Gladden-Young A, Freije CA, Omoregie O, Osiemi B, Muoebonam EB, Airende M, Enigbe R, Ebo B, Nosamiefan I, Oluniyi P, Nekoui M, Ogbaini-Emovon E, Garry RF, Andersen KG, Park DJ, Yozwiak NL, Akpede G, Ihekweazu C, Tomori O, Okogbenin S, Folarin OA, Okokhere PO, MacInnis BL, Sabeti PC, Happi  CT. Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018. N Engl J Med. 2018 Nov 1;379(18):1745-1753. doi: 10.1056/NEJMoa1804498. Epub 2018 Oct 17. PubMed PMID: 30332564; PubMed Central PMCID: PMC6181183.

Reshef YA, Finucane HK, Kelley DR, Gusev A, Kotliar D, Ulirsch JC, Hormozdiari F, Nasser J, O'Connor L, van de Geijn B, Loh PR, Grossman SR, Bhatia G, Gazal S, Palamara PF, Pinello L, Patterson N, Adams RP, Price AL. Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk. Nat Genet. 2018 Oct;50(10):1483-1493. doi: 10.1038/s41588-018-0196-7. Epub 2018 Sep 3. PubMed PMID: 30177862; PubMed Central PMCID: PMC6202062.

Sakabe S, Sullivan BM, Hartnett JN, Robles-Sikisaka R, Gangavarapu K, Cubitt B, Ware BC, Kotliar D, Branco LM, Goba A, Momoh M, Sandi JD, Kanneh L, Grant DS,  Garry RF, Andersen KG, de la Torre JC, Sabeti PC, Schieffelin JS, Oldstone MBA. Analysis of CD8(+) T cell response during the 2013-2016 Ebola epidemic in West Africa. Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):E7578-E7586. doi: 10.1073/pnas.1806200115. Epub 2018 Jul 23. PubMed PMID: 30038008; PubMed Central  PMCID: PMC6094108.

Boisen ML, Hartnett JN, Shaffer JG, Goba A, Momoh M, Sandi JD, Fullah M, Nelson DKS, Bush DJ, Rowland MM, Heinrich ML, Koval AP, Cross RW, Barnes KG, Lachenauer AE, Lin AE, Nekoui M, Kotliar D, Winnicki SM, Siddle KJ, Gbakie M, Fonnie M, Koroma VJ, Kanneh L, Kulakosky PC, Hastie KM, Wilson RB, Andersen KG, Folarin OO, Happi CT, Sabeti PC, Geisbert TW, Saphire EO, Khan SH, Grant DS, Schieffelin JS, Branco LM, Garry RF. Field validation of recombinant antigen immunoassays for diagnosis of Lassa fever. Sci Rep. 2018 Apr 12;8(1):5939. doi: 10.1038/s41598-018-24246-w. PubMed PMID: 29651117; PubMed Central PMCID: PMC5897328.

Tewhey R, Kotliar D, Park DS, Liu B, Winnicki S, Reilly SK, Andersen KG, Mikkelsen TS, Lander ES, Schaffner SF, Sabeti PC. Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay. Cell. 2018 Feb 22;172(5):1132-1134. doi: 10.1016/j.cell.2018.02.021. PubMed PMID: 29474912.

Panchakshari RA, Zhang X, Kumar V, Du Z, Wei PC, Kao J, Dong J, Alt FW. DNA double-strand break response factors influence end-joining features of IgH class switch and general translocation junctions. Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):762-767. doi: 10.1073/pnas.1719988115. Epub 2018 Jan 8. PubMed PMID: 29311308; PubMed Central PMCID: PMC5789958.

Shao P, Seiler TG, Eltony AM, Ramier A, Kwok SJJ, Scarcelli G, Ii RP, Yun SH.  Effects of Corneal Hydration on Brillouin Microscopy In Vivo. Invest Ophthalmol Vis Sci. 2018 Jun 1;59(7):3020-3027. doi: 10.1167/iovs.18-24228. PubMed PMID: 30025137; PubMed Central PMCID: PMC5995485

Kwok SJJ, Jo Y, Lin HH, Choi M, Yun SH. Millisecond cellular labelling in situ with two-photon photoconversion. Biomed Opt Express. 2018 Jun 11;9(7):3067-3077.  doi: 10.1364/BOE.9.003067. eCollection 2018 Jul 1. PubMed PMID: 29984083; PubMed  Central PMCID: PMC6033565.

Roh DS, Li EB, Liao EC. CRISPR Craft: DNA Editing the Reconstructive Ladder. Plast Reconstr Surg. 2018 Nov;142(5):1355-1364. doi: 10.1097/PRS.0000000000004863. PMID: 30511992.

Lu X, Fernando T, Lossos C, Yusufova N, Liu F, Fontán L, Durant M, Geng H, Melnick J, Luo Y, Vega F, Moy V, Inghirami G, Nimer S, Melnick AM, Lossos IS. PRMT5 interacts with the BCL6 oncoprotein and is required for germinal center formation and lymphoma cell survival. Blood. 2018 Aug 6. pii: blood-2018-02-831438. doi: 10.1182/blood-2018-02-831438. [Epub ahead of print] PubMed PMID: 30082494.

Gurry T; HST Microbiome Consortium*, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. *Collaborators: Dannenberg PH, Finlayson SG, Hughes TK, Macias-Trevino C, Owusu-Boaitey K, Shomorony A, Tuang SL, Valenstein ML, Wang KK, Wu MP, Zack TI. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. PubMed PMID: 30139999; PubMed Central PMCID: PMC6107591

Yamauchi T, Masuda T, Canver MC, Seiler M, Semba Y, Shboul M, Al-Raqad M, Maeda M, Schoonenberg VAC, Cole MA, Macias-Trevino C, Ishikawa Y, Yao Q, Nakano M, Arai F, Orkin SH, Reversade B, Buonamici S, Pinello L, Akashi K, Bauer DE, Maeda T. Genome-wide CRISPR-Cas9 Screen Identifies Leukemia-Specific Dependence on a Pre-mRNA Metabolic Pathway Regulated by DCPS. Cancer Cell. 2018 Mar 12;33(3):386-400.e5. doi: 10.1016/j.ccell.2018.01.012. Epub 2018 Feb 22. PubMed PMID: 29478914; PubMed Central PMCID: PMC5849534.

Liu N, Hargreaves VV, Zhu Q, Kurland JV, Hong J, Kim W, Sher F, Macias-Trevino C, Rogers JM, Kurita R, Nakamura Y, Yuan GC, Bauer DE, Xu J, Bulyk ML, Orkin SH.  Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch. Cell. 2018 Apr 5;173(2):430-442.e17. doi: 10.1016/j.cell.2018.03.016. Epub 2018 Mar 29. PubMed PMID: 29606353; PubMed Central PMCID: PMC5889339.

Schoonenberg VAC, Cole MA, Yao Q, Macias-Treviño C, Sher F, Schupp PG, Canver MC, Maeda T, Pinello L, Bauer DE. CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis. Genome Biol. 2018 Oct 19;19(1):169. doi: 10.1186/s13059-018-1563-5. PMID: 30340514; PMCID: PMC6195731.

McBrayer SK, Mayers JR, DiNatale GJ, Shi DD, Khanal J, Chakraborty AA, Sarosiek KA, Briggs KJ, Robbins AK, Sewastianik T, Shareef SJ, Olenchock BA, Parker SJ, Tateishi K, Spinelli JB, Islam M, Haigis MC, Looper RE, Ligon KL, Bernstein BE, Carrasco RD, Cahill DP, Asara JM, Metallo CM, Yennawar NH, Vander Heiden MG, Kaelin WG Jr. Transaminase Inhibition by 2-Hydroxyglutarate Impairs Glutamate Biosynthesis and Redox Homeostasis in Glioma. Cell. 2018 Sep 20;175(1):101-116.e25. doi: 10.1016/j.cell.2018.08.038. Epub 2018 Sep 13. PubMed PMID: 30220459; PubMed Central PMCID: PMC6219629.

Mashtalir N, D'Avino AR, Michel BC, Luo J, Pan J, Otto JE, Zullow HJ, McKenzie ZM, Kubiak RL, St Pierre R, Valencia AM, Poynter SJ, Cassel SH, Ranish JA, Kadoch C. Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes. Cell. 2018 Oct 18. pii: S0092-8674(18)31244-3. doi: 10.1016/j.cell.2018.09.032. [Epub ahead of print] PubMed PMID: 30343899.

Michel BC, D'Avino AR, Cassel SH, Mashtalir N, McKenzie ZM, McBride MJ, Valencia AM, Zhou Q, Bocker M, Soares LMM, Pan J, Remillard DI, Lareau CA, Zullow HJ, Fortoul N, Gray NS, Bradner JE, Chan HM, Kadoch C. A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation. Nat Cell Biol. 2018 Nov 5. doi: 10.1038/s41556-018-0221-1. [Epub ahead of print] PubMed PMID: 30397315.

Forget MA, Haymaker C, Hess KR, Meng YJ, Creasy C, Karpinets T, Fulbright OJ,  Roszik J, Woodman SE, Kim YU, Sakellariou-Thompson D, Bhatta A, Wahl A, Flores E, Thorsen ST, Tavera RJ, Ramachandran R, Gonzalez AM, Toth CL, Wardell S, Mansaray  R, Patel V, Carpio DJ, Vaughn C, Farinas CM, Velasquez PG, Hwu WJ, Patel SP, Davies MA, Diab A, Glitza IC, Tawbi H, Wong MK, Cain S, Ross MI, Lee JE, Gershenwald JE, Lucci A, Royal R, Cormier JN, Wargo JA, Radvanyi LG, Torres-Cabala CA, Beroukhim R, Hwu P, Amaria RN, Bernatchez C. Prospective Analysis of Adoptive TIL Therapy in Patients with Metastatic Melanoma: Response,  Impact of Anti-CTLA4, and Biomarkers to Predict Clinical Outcome. Clin Cancer Res. 2018 Sep 15;24(18):4416-4428. doi: 10.1158/1078-0432.CCR-17-3649. Epub 2018  May 30. PubMed PMID: 29848573; PubMed Central PMCID: PMC6139043.

Escudero S, Zaganjor E, Lee S, Mill CP, Morgan AM, Crawford EB, Chen J, Wales  TE, Mourtada R, Luccarelli J, Bird GH, Steidl U, Engen JR, Haigis MC, Opferman JT, Walensky LD. Dynamic Regulation of Long-Chain Fatty Acid Oxidation by a Noncanonical Interaction between the MCL-1 BH3 Helix and VLCAD. Mol Cell. 2018 Mar 1;69(5):729-743.e7. doi: 10.1016/j.molcel.2018.02.005. PubMed PMID: 29499131; PubMed Central PMCID: PMC5916823.

Stolte B, Iniguez AB, Dharia NV, Robichaud AL, Conway AS, Morgan AM, Alexe G,  Schauer NJ, Liu X, Bird GH, Tsherniak A, Vazquez F, Buhrlage SJ, Walensky LD, Stegmaier K. Genome-scale CRISPR-Cas9 screen identifies druggable dependencies in TP53 wild-type Ewing sarcoma. J Exp Med. 2018 Aug 6;215(8):2137-2155. doi: 10.1084/jem.20171066. Epub 2018 Jul 25. PubMed PMID: 30045945; PubMed Central PMCID: PMC6080915.

Cheadle L, Tzeng CP, Kalish BT, Harmin DA, Rivera S, Ling E, Nagy MA, Hrvatin  S, Hu L, Stroud H, Burkly LC, Chen C, Greenberg ME. Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement. Neuron. 2018 Aug  8;99(3):525-539.e10. doi: 10.1016/j.neuron.2018.06.036. Epub 2018 Jul 19. PubMed  PMID: 30033152; PubMed Central PMCID: PMC6101651.

Kalish BT, Cheadle L, Hrvatin S, Nagy MA, Rivera S, Crow M, Gillis J, Kirchner R, Greenberg ME. Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement. Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):E1051-E1060. doi: 10.1073/pnas.1717871115. Epub 2018 Jan 17. PubMed PMID: 29343640; PubMed Central PMCID: PMC5798372.

Hrvatin S, Hochbaum DR, Nagy MA, Cicconet M, Robertson K, Cheadle L, Zilionis  R, Ratner A, Borges-Monroy R, Klein AM, Sabatini BL, Greenberg ME. Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci. 2018 Jan;21(1):120-129. doi: 10.1038/s41593-017-0029-5. Epub 2017 Dec 11. Erratum in: Nat Neurosci. 2018 May 11;:. PubMed PMID: 29230054; PubMed Central PMCID: PMC5742025.

Pradier B, Lanning K, Taljan KT, Feuille CJ, Nagy MA, Kauer JA. Persistent but Labile Synaptic Plasticity at Excitatory Synapses. J Neurosci. 2018 Jun 20;38(25):5750-5758. doi: 10.1523/JNEUROSCI.2772-17.2018. Epub 2018 May 25. PubMed PMID: 29802202; PubMed Central PMCID: PMC6010561.

Renthal W, Boxer LD, Hrvatin S, Li E, Silberfeld A, Nagy MA, Griffith EC, Vierbuchen T, Greenberg ME. Characterization of human mosaic Rett syndrome brain tissue by single-nucleus RNA sequencing. Nat Neurosci. 2018 Dec;21(12):1670-1679. doi: 10.1038/s41593-018-0270-6. Epub 2018 Nov 19. PMID: 30455458; PMCID: PMC6261686.

Claw KG, Anderson MZ, Begay RL, Tsosie KS, Fox K, Garrison NA, (Nakatsuka, N); Summer internship for INdigenous peoples in Genomics (SING) Consortium. A framework for  enhancing ethical genomic research with Indigenous communities. Nat Commun. 2018  Jul 27;9(1):2957. doi: 10.1038/s41467-018-05188-3. Review. PubMed PMID: 30054469; PubMed Central PMCID: PMC6063854.

Bardill J, Bader AC, Garrison NA, Bolnick DA, Raff JA, Walker A, Malhi RS,  (Nakatsuka, N);Summer internship for INdigenous peoples in Genomics (SING) Consortium. Advancingthe ethics of paleogenomics. Science. 2018 Apr 27;360(6387):384-385. doi: 10.1126/science.aaq1131. Epub 2018 Apr 26. PubMed PMID: 29700256; PubMed Central PMCID: PMC6150602.

Posth C*, Nakatsuka N*, Lazaridis I, Skoglund P, Mallick S, Lamnidis TC, Rohland N, Nägele K, Adamski N, Bertolini E, Broomandkhoshbacht N, Cooper A, Culleton BJ, Ferraz T, Ferry M, Furtwängler A, Haak W, Harkins K, Harper TK, Hünemeier T, Lawson AM, Llamas B, Michel M, Nelson E, Oppenheimer J, Patterson N, Schiffels S, Sedig J, Stewardson K, Talamo S, Wang CC, Hublin JJ, Hubbe M, Harvati K, Nuevo Delaunay A, Beier J, Francken M, Kaulicke P, Reyes-Centeno H, Rademaker K, Trask  WR, Robinson M, Gutierrez SM, Prufer KM, Salazar-García DC, Chim EN, Müller Plumm, Gomes L, Alves ML, Liryo A, Inglez M, Oliveira RE, Bernardo DV, Barioni A, Wesolowski V, Scheifler NA, Rivera MA, Plens CR, Messineo PG, Figuti L, Corach D, Scabuzzo C, Eggers S, DeBlasis P, Reindel M, Méndez C, Politis G, Tomasto-Cagigao E, Kennett DJ, Strauss A, Fehren-Schmitz L, Krause J, Reich D. Reconstructing the Deep Population History of Central and South America. Cell. 2018 Nov 8. pii: S0092-8674(18)31380-1. doi: 10.1016/j.cell.2018.10.027. [Epub ahead of print] PubMed PMID: 30415837.

Bourdeau RW, Lee-Gosselin A, Lakshmanan A, Farhadi A, Kumar SR, Nety SP, Shapiro MG. Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts. Nature. 2018 Jan 3;553(7686):86-90. doi: 10.1038/nature25021. PubMed PMID: 29300010; PubMed Central PMCID: PMC5920530.

Kponee KZ, Nwanaji-Enwerem JC, Fu X, Kakulu II, Weisskopf MG, Jia C. Elevated  Indoor Volatile Organic Compound Exposure in the Niger Delta Region of Nigeria. Int J Environ Res Public Health. 2018 Sep 6;15(9). pii: E1939. doi: 10.3390/ijerph15091939. PubMed PMID: 30200602; PubMed Central PMCID: PMC6164300.

Nwanaji-Enwerem JC, Wang W, Nwanaji-Enwerem O, Vokonas P, Baccarelli A, Weisskopf M, Herndon LW, Wiggs JL, Park SK, Schwartz J. Association of Long-term  Ambient Black Carbon Exposure and Oxidative Stress Allelic Variants With Intraocular Pressure in Older Men. JAMA Ophthalmol. 2018 Nov 8. doi: 10.1001/jamaophthalmol.2018.5313. [Epub ahead of print] PubMed PMID: 30419128

Gao X, Colicino E, Shen J, Just AC, Nwanaji-Enwerem JC, Coull B, Lin X, Vokonas P, Zheng Y, Hou L, Schwartz J, Baccarelli AA. Accelerated DNA methylation age and the use of antihypertensive medication among older adults. Aging (Albany  NY). 2018 Nov 10. doi: 10.18632/aging.101626. [Epub ahead of print] PubMed PMID:  30414594.

Carmona JJ, Barfield RT, Panni T, Nwanaji-Enwerem JC, Just AC, Hutchinson JN,  Colicino E, Karrasch S, Wahl S, Kunze S, Jafari N, Zheng Y, Hou L, DeMeo DL, Litonjua AA, Vokonas PS, Peters A, Lin X, Schwartz J, Schulz H, Baccarelli AA. Metastable DNA methylation sites associated with longitudinal lung function decline and aging in humans: an epigenome-wide study in the NAS and KORA cohorts. Epigenetics. 2018 Oct 21:1-17. doi: 10.1080/15592294.2018.1529849. [Epub ahead of print] PubMed PMID: 30343628.

Nwanaji-Enwerem JC, Cardenas A, Chai PR, Weisskopf MG, Baccarelli AA, Boyer EW. Relationships of Long-term Smoking and Moist Snuff Consumption with a DNA Methylation Age Relevant Smoking Index: An Analysis in Buccal Cells. Nicotine Tob Res. 2018 Jul 21. doi: 10.1093/ntr/nty156. [Epub ahead of print] PubMed PMID: 30053132.

Dhingra R, Nwanaji-Enwerem JC, Samet M, Ward-Caviness CK. DNA Methylation Age-Environmental Influences, Health Impacts, and Its Role in Environmental Epidemiology. Curr Environ Health Rep. 2018 Sep;5(3):317-327. doi: 10.1007/s40572-018-0203-2. Review. PubMed PMID: 30047075; PubMed Central PMCID: PMC6173330.

Nwanaji-Enwerem JC, Weisskopf MG, Baccarelli AA. Multi-tissue DNA methylation  age: Molecular relationships and perspectives for advancing biomarker utility. Ageing Res Rev. 2018 Aug;45:15-23. doi: 10.1016/j.arr.2018.04.005. Epub 2018 Apr  23. Review. PubMed PMID: 29698722; PubMed Central PMCID: PMC6047923.

Gurry T; HST Microbiome Consortium*, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. *Collaborators: Dannenberg PH, Finlayson SG, Hughes TK, Macias-Trevino C, Owusu-Boaitey K, Shomorony A, Tuang SL, Valenstein ML, Wang KK, Wu MP, Zack TI. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. PubMed PMID: 30139999; PubMed Central PMCID: PMC6107591

Elfiky AA, Pany MJ, Parikh RB, Obermeyer Z. Development and Application of a Machine Learning Approach to Assess Short-term Mortality Risk Among Patients With Cancer Starting Chemotherapy. JAMA Netw Open. 2018 Jul 6;1(3):e180926. doi: 10.1001/jamanetworkopen.2018.0926. PubMed PMID: 30646043; PubMed Central PMCID: PMC6324307.

Rodriguez-Fraticelli AE, Wolock SL, Weinreb CS, Panero R, Patel SH, Jankovic M, Sun J, Calogero RA, Klein AM, Camargo FD. Clonal analysis of lineage fate in native haematopoiesis. Nature. 2018 Jan 11;553(7687):212-216. doi: 10.1038/nature25168. Epub 2018 Jan 3. PubMed PMID: 29323290; PubMed Central PMCID: PMC5884107.

Osorio FG, Rosendahl Huber A, Oka R, Verheul M, Patel SH, Hasaart K, de la Fonteijne L, Varela I, Camargo FD, van Boxtel R. Somatic Mutations Reveal Lineage Relationships and Age-Related Mutagenesis in Human Hematopoiesis. Cell Rep. 2018 Nov 27;25(9):2308-2316.e4. doi: 10.1016/j.celrep.2018.11.014. PMID: 30485801; PMCID: PMC6289083.

Wang L, Rowe RG, Jaimes A, Yu C, Nam Y, Pearson DS, Zhang J, Xie X, Marion W,  Heffron GJ, Daley GQ, Sliz P. Small-Molecule Inhibitors Disrupt let-7 Oligouridylation and Release the Selective Blockade of let-7 Processing by LIN28. Cell Rep. 2018 Jun 5;23(10):3091-3101. doi: 10.1016/j.celrep.2018.04.116. PubMed  PMID: 29874593.

Fung V, Peitzman CGK, Shi J, Liang CY, Dow WH, Zaslavsky AM, Fireman BH, Derose SF, Chernew ME, Newhouse JP, Hsu J. Adverse Selection into and within the  Individual Health Insurance Market in California in 2014. Health Serv Res. 2018 Oct;53(5):3750-3769. doi: 10.1111/1475-6773.12868. Epub 2018 May 17. PubMed PMID: 29774534; PubMed Central PMCID: PMC6153153.

Wang X, Raghavan A, Peters DT, Pashos EE, Rader DJ, Musunuru K. Interrogation  of the Atherosclerosis-Associated SORT1 (Sortilin 1) Locus With Primary Human Hepatocytes, Induced Pluripotent Stem Cell-Hepatocytes, and Locus-Humanized Mice. Arterioscler Thromb Vasc Biol. 2018 Jan;38(1):76-82. doi: 10.1161/ATVBAHA.117.310103. Epub 2017 Nov 2. PubMed PMID: 29097363; PubMed Central PMCID: PMC5746470.

Pierson L, Millum J. Health Research Priority Setting: The Duties of Individual Funders. Am J Bioeth. 2018 Nov;18(11):6-17. doi: 10.1080/15265161.2018.1523490. PMID: 30475176.

Millum J, Pierson L. Response to Open Peer Commentaries on "Health Research Priority Setting: The Duties of Individual Funders". Am J Bioeth. 2019 Jan;19(1):W5-W7. doi: 10.1080/15265161.2018.1536769. PMID: 30676896.

Koch R, Christie AL, Crombie JL, Palmer AC, Plana D, Shigemori K, Morrow SN, Van Scoyk A, Wu W, Brem EA, Secrist JP, Drew L, Schuller A, Cidado J, Letai A, Weinstock DM. Biomarker-driven strategy for MCL1 inhibition in T-cell lymphomas.  Blood. 2018 Nov 29. pii: blood-2018-07-865527. doi: 10.1182/blood-2018-07-865527.[Epub ahead of print] PubMed PMID: 30498064

Reshef, D.*, Reshef, Y.*, Finucane, H., Mitzenmacher, M., Sabeti, P.; * co-first authors. An empirical study of the maximal and total information coefficients and leading measures of dependence. Annals of Applied Statistics. 2018, Mar; 12(1): 123-155.

Reshef YA, Finucane HK, Kelley DR, Gusev A, Kotliar D, Ulirsch JC, Hormozdiari F, Nasser J, O'Connor L, van de Geijn B, Loh PR, Grossman SR, Bhatia G, Gazal S,  Palamara PF, Pinello L, Patterson N, Adams RP, Price AL. Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk. Nat Genet. 2018 Oct;50(10):1483-1493. doi: 10.1038/s41588-018-0196-7. Epub 2018 Sep 3. PubMed PMID: 30177862; PubMed Central PMCID: PMC6202062.

Loh PR, Genovese G, Handsaker RE, Finucane HK, Reshef YA, Palamara PF, Birmann BM, Talkowski ME, Bakhoum SF, McCarroll SA, Price AL. Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations. Nature. 2018 Jul;559(7714):350-355. doi: 10.1038/s41586-018-0321-x. Epub 2018 Jul 11. PubMed PMID: 29995854; PubMed Central PMCID: PMC6054542.

Hormozdiari F, Gazal S, van de Geijn B, Finucane HK, Ju CJ, Loh PR, Schoech A, Reshef Y, Liu X, O'Connor L, Gusev A, Eskin E, Price AL. Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits. Nat Genet. 2018 Jul;50(7):1041-1047. doi: 10.1038/s41588-018-0148-2. Epub 2018 Jun 25. PubMed PMID: 29942083; PubMed Central PMCID: PMC6030458.

Gusev A, Mancuso N, Won H, Kousi M, Finucane HK, Reshef Y, Song L, Safi A; Schizophrenia Working Group of the Psychiatric Genomics Consortium, McCarroll S,  Neale BM, Ophoff RA, O'Donovan MC, Crawford GE, Geschwind DH, Katsanis N, Sullivan PF, Pasaniuc B, Price AL. Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights. Nat Genet. 2018 Apr;50(4):538-548. doi: 10.1038/s41588-018-0092-1. Epub 2018 Apr 9. PubMed PMID: 29632383; PubMed Central PMCID: PMC5942893.

Finucane HK, Reshef YA, Anttila V, Slowikowski K, Gusev A, Byrnes A, Gazal S,  Loh PR, Lareau C, Shoresh N, Genovese G, Saunders A, Macosko E, Pollack S; Brainstorm Consortium, Perry JRB, Buenrostro JD, Bernstein BE, Raychaudhuri S, McCarroll S, Neale BM, Price AL. Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. Nat Genet. 2018 Apr;50(4):621-629. doi: 10.1038/s41588-018-0081-4. Epub 2018 Apr 9. PubMed PMID: 29632380; PubMed Central PMCID: PMC5896795.

Kelley DR, Reshef YA, Bileschi M, Belanger D, McLean CY, Snoek J. Sequential regulatory activity prediction across chromosomes with convolutional neural networks. Genome Res. 2018 May;28(5):739-750. doi: 10.1101/gr.227819.117. Epub 2018 Mar 27. PubMed PMID: 29588361; PubMed Central PMCID: PMC5932613.

Rodin RE, Walsh CA. Somatic Mutation in Pediatric Neurological Diseases. Pediatr Neurol. 2018 Aug 11. pii: S0887-8994(18)30858-0. doi: 10.1016/j.pediatrneurol.2018.08.008. [Epub ahead of print] Review. PubMed PMID: 30249355.

McBrayer SK, Mayers JR, DiNatale GJ, Shi DD, Khanal J, Chakraborty AA, Sarosiek KA, Briggs KJ, Robbins AK, Sewastianik T, Shareef SJ, Olenchock BA, Parker SJ, Tateishi K, Spinelli JB, Islam M, Haigis MC, Looper RE, Ligon KL, Bernstein BE, Carrasco RD, Cahill DP, Asara JM, Metallo CM, Yennawar NH, Vander Heiden MG, Kaelin WG Jr. Transaminase Inhibition by 2-Hydroxyglutarate Impairs Glutamate Biosynthesis and Redox Homeostasis in Glioma. Cell. 2018 Sep 20;175(1):101-116.e25. doi: 10.1016/j.cell.2018.08.038. Epub 2018 Sep 13. PubMed  PMID: 30220459; PubMed Central PMCID: PMC6219629.

Sievers QL, Petzold G, Bunker RD, Renneville A, Słabicki M, Liddicoat BJ, Abdulrahman W, Mikkelsen T, Ebert BL, Thomä NH. Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN. Science. 2018 Nov 2;362(6414). pii: eaat0572. doi: 10.1126/science.aat0572. PubMed PMID: 30385546.

Sievers QL, Gasser JA, Cowley GS, Fischer ES, Ebert BL. Genome-wide screen identifies cullin-RING ligase machinery required for lenalidomide-dependent CRL4(CRBN) activity. Blood. 2018 Sep 20;132(12):1293-1303. doi: 10.1182/blood-2018-01-821769. Epub 2018 Jul 24. PubMed PMID: 30042095; PubMed Central PMCID: PMC6148446.

Starkweather CK, Gershman SJ, Uchida N. The Medial Prefrontal Cortex Shapes Dopamine Reward Prediction Errors under State Uncertainty. Neuron. 2018 May 2;98(3):616-629.e6. doi: 10.1016/j.neuron.2018.03.036. Epub 2018 Apr 12. PubMed PMID: 29656872; PubMed Central PMCID: PMC5934341.

Steinhorn B, Sorrentino A, Badole S, Bogdanova Y, Belousov V, Michel T. Chemogenetic generation of hydrogen peroxide in the heart induces severe cardiac  dysfunction. Nat Commun. 2018 Oct 2;9(1):4044. doi: 10.1038/s41467-018-06533-2. PubMed PMID: 30279532; PubMed Central PMCID: PMC6168530.

Sorrentino A, Steinhorn B, Troncone L, et al. Reversal of heart failure in a chemogenetic model of persistent cardiac redox stress. Am J Physiol Heart Circ Physiol. 2019;317(3):H617–H626. doi:10.1152/ajpheart.00177.2019

Agarwal V, Subtelny AO, Thiru P, Ulitsky I, Bartel DP. Predicting microRNA targeting efficacy in Drosophila. Genome Biol. 2018 Oct 4;19(1):152. doi: 10.1186/s13059-018-1504-3. PubMed PMID: 30286781; PubMed Central PMCID: PMC6172730.

Gurry T; HST Microbiome Consortium*, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. *Collaborators: Dannenberg PH, Finlayson SG, Hughes TK, Macias-Trevino C, Owusu-Boaitey K, Shomorony A, Tuang SL, Valenstein ML, Wang KK, Wu MP, Zack TI. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. PubMed PMID: 30139999; PubMed Central PMCID: PMC6107591

Gurry T; HST Microbiome Consortium*, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. *Collaborators: Dannenberg PH, Finlayson SG, Hughes TK, Macias-Trevino C, Owusu-Boaitey K, Shomorony A, Tuang SL, Valenstein ML, Wang KK, Wu MP, Zack TI. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. PubMed PMID: 30139999; PubMed Central PMCID: PMC6107591

Shen K, Huang RK, Brignole EJ, Condon KJ, Valenstein ML, Chantranupong L, Bomaliyamu A, Choe A, Hong C, Yu Z, Sabatini DM. Architecture of the human GATOR1 and GATOR1-Rag GTPases complexes. Nature. 2018 Apr 5;556(7699):64-69. doi: 10.1038/nature26158. Epub 2018 Mar 28. PubMed PMID: 29590090; PubMed Central PMCID: PMC5975964.

Tsabar M, Mock CS, Venkatachalam V, Reyes J, Karhohs KW, Oliver TG, Regev A, Jambhekar A, Lahav G. A Switch in p53 Dynamics Marks Cells That Escape from DSB-Induced Cell Cycle Arrest. Cell Rep. 2020 Aug 4;32(5):107995. doi: 10.1016/j.celrep.2020.107995. Erratum in: Cell Rep. 2020 Nov 10;33(6):108392. PMID: 32755587; PMCID: PMC7521664.

Wala JA, Bandopadhayay P, Greenwald NF, O'Rourke R, Sharpe T, Stewart C, Schumacher S, Li Y, Weischenfeldt J, Yao X, Nusbaum C, Campbell P, Getz G, Meyerson M, Zhang CZ, Imielinski M, Beroukhim R. SvABA: genome-wide detection of structural variants and indels by local assembly. Genome Res. 2018 Apr;28(4):581-591. doi: 10.1101/gr.221028.117. Epub 2018 Mar 13. PubMed PMID: 29535149; PubMed Central PMCID: PMC5880247.

Chapuy B, Stewart C, Dunford AJ, Kim J, Kamburov A, Redd RA, Lawrence MS, Roemer MGM, Li AJ, Ziepert M, Staiger AM, Wala JA, Ducar MD, Leshchiner I, Rheinbay E, Taylor-Weiner A, Coughlin CA, Hess JM, Pedamallu CS, Livitz D, Rosebrock D, Rosenberg M, Tracy AA, Horn H, van Hummelen P, Feldman AL, Link BK,  Novak AJ, Cerhan JR, Habermann TM, Siebert R, Rosenwald A, Thorner AR, Meyerson ML, Golub TR, Beroukhim R, Wulf GG, Ott G, Rodig SJ, Monti S, Neuberg DS, Loeffler M, Pfreundschuh M, Trümper L, Getz G, Shipp MA. Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms  and outcomes. Nat Med. 2018 May;24(5):679-690. doi: 10.1038/s41591-018-0016-8. Epub 2018 Apr 30. Erratum in: Nat Med. 2018 Aug;24(8):1292. Nat Med. 2018 Aug;24(8):1290-1291. PubMed PMID: 29713087

Viswanathan SR, Ha G, Hoff AM, Wala JA, Carrot-Zhang J, Whelan CW, Haradhvala  NJ, Freeman SS, Reed SC, Rhoades J, Polak P, Cipicchio M, Wankowicz SA, Wong A, Kamath T, Zhang Z, Gydush GJ, Rotem D; PCF/SU2C International Prostate Cancer Dream Team, Love JC, Getz G, Gabriel S, Zhang CZ, Dehm SM, Nelson PS, Van Allen EM, Choudhury AD, Adalsteinsson VA, Beroukhim R, Taplin ME, Meyerson M. Structural Alterations Driving Castration-Resistant Prostate Cancer Revealed by Linked-Read Genome Sequencing. Cell. 2018 Jul 12;174(2):433-447.e19. doi: 10.1016/j.cell.2018.05.036. Epub 2018 Jun 18. PubMed PMID: 29909985; PubMed Central PMCID: PMC6046279.

Chapuy B, Stewart C, Dunford AJ, Kim J, Kamburov A, Redd RA, Lawrence MS, Roemer MGM, Li AJ, Ziepert M, Staiger AM, Wala JA, Ducar MD, Leshchiner I, Rheinbay E, Taylor-Weiner A, Coughlin CA, Hess JM, Pedamallu CS, Livitz D, Rosebrock D, Rosenberg M, Tracy AA, Horn H, van Hummelen P, Feldman AL, Link BK,  Novak AJ, Cerhan JR, Habermann TM, Siebert R, Rosenwald A, Thorner AR, Meyerson ML, Golub TR, Beroukhim R, Wulf GG, Ott G, Rodig SJ, Monti S, Neuberg DS, Loeffler M, Pfreundschuh M, Trümper L, Getz G, Shipp MA. Publisher Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct  pathogenic mechanisms and outcomes. Nat Med. 2018 Aug;24(8):1292. doi: 10.1038/s41591-018-0098-3. PubMed PMID: 29955181.

Chapuy B, Stewart C, Dunford AJ, Kim J, Kamburov A, Redd RA, Lawrence MS, Roemer MGM, Li AJ, Ziepert M, Staiger AM, Wala JA, Ducar MD, Leshchiner I, Rheinbay E, Taylor-Weiner A, Coughlin CA, Hess JM, Pedamallu CS, Livitz D, Rosebrock D, Rosenberg M, Tracy AA, Horn H, van Hummelen P, Feldman AL, Link BK, Novak AJ, Cerhan JR, Habermann TM, Siebert R, Rosenwald A, Thorner AR, Meyerson ML, Golub TR, Beroukhim R, Wulf GG, Ott G, Rodig SJ, Monti S, Neuberg DS, Loeffler M, Pfreundschuh M, Trümper L, Getz G, Shipp MA. Author Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct  pathogenic mechanisms and outcomes. Nat Med. 2018 Aug;24(8):1290-1291. doi: 10.1038/s41591-018-0097-4. PubMed PMID: 29955182.

Wen LS, Warren KE. Combatting the opioid epidemic: Baltimore's experience and  lessons learned. J Public Health (Oxf). 2018 Jun 1;40(2):e107-e111. doi: 10.1093/pubmed/fdx093. PubMed PMID: 28985362.

Jack HE, Warren KE, Sundaram S, Gheihman G, Weems J, Raja AS, Miller ES. Making Naloxone Rescue Part of Basic Life Support Training for Medical Students.  AEM Educ Train. 2018 Mar 30;2(2):174-177. doi: 10.1002/aet2.10095. eCollection 2018 Apr. PubMed PMID: 30051085; PubMed Central PMCID: PMC6001730

Shafee R, Nanda P, Padmanabhan JL, Tandon N, Alliey-Rodriguez N, Kalapurakkel  S, Weiner DJ, Gur RE, Keefe RSE, Hill SK, Bishop JR, Clementz BA, Tamminga CA, Gershon ES, Pearlson GD, Keshavan MS, Sweeney JA, McCarroll SA, Robinson EB. Polygenic risk for schizophrenia and measured domains of cognition in individuals with psychosis and controls. Transl Psychiatry. 2018 Apr 12;8(1):78. doi: 10.1038/s41398-018-0124-8. PubMed PMID: 29643358; PubMed Central PMCID: PMC5895806.

Haining WN, Weiss SA. c-Maf in CD4(+) T cells: it's all about context. Nat Immunol. 2018 May;19(5):429-431. doi: 10.1038/s41590-018-0087-1. Erratum in: Nat Immunol. 2018 Oct;19(10):1146. PubMed PMID: 29670237.

Hwang WL, Wolfson RL, Niemierko A, Marcus KJ, DuBois SG, Haas-Kogan D. Clinical Impact of Tumor Mutational Burden in Neuroblastoma. J Natl Cancer Inst.  2018 Oct 10. doi: 10.1093/jnci/djy157. [Epub ahead of print] PubMed PMID: 30307503.

Yuskaitis CJ, Jones BM, Wolfson RL, Super CE, Dhamne SC, Rotenberg A, Sabatini DM, Sahin M, Poduri A. A mouse model of DEPDC5-related epilepsy: Neuronal loss of Depdc5 causes dysplastic and ectopic neurons, increased mTOR signaling, and seizure susceptibility. Neurobiol Dis. 2018 Mar;111:91-101. doi:10.1016/j.nbd.2017.12.010. Epub 2017 Dec 20. PubMed PMID: 29274432; PubMed Central PMCID: PMC5803417.

Yan WX, Chong S, Zhang H, Makarova KS, Koonin EV, Cheng DR, Scott DA. Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein. Mol Cell. 2018 Apr 19;70(2):327-339.e5.  doi: 10.1016/j.molcel.2018.02.028. Epub 2018 Mar 15. PubMed PMID: 29551514; PubMed Central PMCID: PMC5935466.

Moynihan KD, Holden RL, Mehta NK, Wang C, Karver MR, Dinter J, Liang S, Abraham W, Melo MB, Zhang AQ, Li N, Gall SL, Pentelute BL, Irvine DJ. Enhancement of Peptide Vaccine Immunogenicity by Increasing Lymphatic Drainage and Boosting Serum Stability. Cancer Immunol Res. 2018 Sep;6(9):1025-1038. doi: 10.1158/2326-6066.CIR-17-0607. Epub 2018 Jun 18. PubMed PMID: 29915023; PubMed Central PMCID: PMC6247902.

Olson CM, Jiang B, Erb MA, Liang Y, Doctor ZM, Zhang Z, Zhang T, Kwiatkowski N, Boukhali M, Green JL, Haas W, Nomanbhoy T, Fischer ES, Young RA, Bradner JE, Winter GE, Gray NS. Pharmacological perturbation of CDK9 using selective CDK9 inhibition or degradation. Nat Chem Biol. 2018 Feb;14(2):163-170. doi: 10.1038/nchembio.2538. Epub 2017 Dec 18. PubMed PMID: 29251720; PubMed Central PMCID: PMC5912898.

Douam F, Ziegler CGK, Hrebikova G, Fant B, Leach R, Parsons L, Wang W, Gaska JM, Winer BY, Heller B, Shalek AK, Ploss A. Selective expansion of myeloid and NK cells in humanized mice yields human-like vaccine responses. Nat Commun. 2018 Nov 28;9(1):5031. doi: 10.1038/s41467-018-07478-2. PubMed PMID: 30487575; PubMed Central PMCID: PMC6262001.

Michel BC, D'Avino AR, Cassel SH, Mashtalir N, McKenzie ZM, McBride MJ, Valencia AM, Zhou Q, Bocker M, Soares LMM, Pan J, Remillard DI, Lareau CA, Zullow HJ, Fortoul N, Gray NS, Bradner JE, Chan HM, Kadoch C. A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation. Nat Cell Biol. 2018 Dec;20(12):1410-1420. doi: 10.1038/s41556-018-0221-1. Epub 2018 Nov 5. PubMed PMID: 30397315.

Mashtalir N, D'Avino AR, Michel BC, Luo J, Pan J, Otto JE, Zullow HJ, McKenzie ZM, Kubiak RL, St Pierre R, Valencia AM, Poynter SJ, Cassel SH, Ranish JA, Kadoch C. Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes. Cell. 2018 Nov 15;175(5):1272-1288.e20. doi: 10.1016/j.cell.2018.09.032. Epub 2018 Oct 18. PubMed PMID: 30343899.