Publications

2016

Abudayyeh OO, Gootenberg JS, Konermann S, Joung J, Slaymaker IM, Cox DB, Shmakov S, Makarova KS, Semenova E, Minakhin L, Severinov K, Regev A, Lander ES, Koonin EV, Zhang F. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector. Science. 2016 Jun 2. pii: aaf5573. [Epub ahead of  print] PubMed PMID: 27256883.

 

Dahlman JE, Abudayyeh OO, Joung J, Gootenberg JS, Zhang F, Konermann S. Corrigendum: Orthogonal gene knockout and activation with a catalytically active  Cas9 nuclease. Nat Biotechnol. 2016 Apr 7;34(4):441. doi: 10.1038/nbt0416-441a. PubMed PMID: 27054997.

 

Hirano H, Gootenberg JS, Horii T, Abudayyeh OO, Kimura M, Hsu PD, Nakane T, Ishitani R, Hatada I, Zhang F, Nishimasu H, Nureki O. Structure and Engineering of Francisella novicida Cas9. Cell. 2016 Feb 25;164(5):950-61. doi:

10.1016/j.cell.2016.01.039. Epub 2016 Feb 11. PubMed PMID: 26875867; PubMed Central PMCID: PMC4899972.

 

Kim JW, Botvinnik OB, Abudayyeh O, Birger C, Rosenbluh J, Shrestha Y, Abazeed  ME, Hammerman PS, DiCara D, Konieczkowski DJ, Johannessen CM, Liberzon A, Alizad-Rahvar AR, Alexe G, Aguirre A, Ghandi M, Greulich H, Vazquez F, Weir BA, Van Allen EM, Tsherniak A, Shao DD, Zack TI, Noble M, Getz G, Beroukhim R, Garraway LA, Ardakani M, Romualdi C, Sales G, Barbie DA, Boehm JS, Hahn WC, Mesirov JP, Tamayo P. Characterizing genomic alterations in cancer by complementary functional associations. Nat Biotechnol. 2016 May;34(5):539-46. doi: 10.1038/nbt.3527. Epub 2016 Apr 18. PubMed PMID: 27088724; PubMed Central PMCID: PMC4868596.

 

Sanguansak T, Morley K, Morley M, Kusakul S, Lee R, Shieh E, Yospaiboon Y, Bhoomibunchoo C, Chai-Ear S, Joseph A, Agarwal I. Comparing smartphone camera adapters in imaging post-operative cataract patients. J Telemed Telecare. 2016 Feb 4. pii: 1357633X15625400. [Epub ahead of print] PubMed PMID: 26851243.

 

Fuchsberger C, Flannick J, Teslovich TM, Mahajan A, Agarwala V,, et. al. The geneticarchitecture of type 2 diabetes. Nature. 2016 Aug 4;536(7614):41-7. PubMed PMID:  27398621.

 

Alkaitis MS, Ackerman HC. Tetrahydrobiopterin Supplementation Improves Phenylalanine Metabolism in a Murine Model of Severe Malaria. ACS Infect Dis. 2016 Sep 27. [Epub ahead of print] PubMed PMID: 27641435.

 

Alkaitis MS, Wang H, Ikeda AK, Rowley CA, MacCormick IJ, Chertow JH, Billker O, Suffredini AF, Roberts DJ, Taylor TE, Seydel KB, Ackerman HC. Decreased Rate of Plasma Arginine Appearance in Murine Malaria May Explain Hypoargininemia in Children With Cerebral Malaria. J Infect Dis. 2016 Dec 15;214(12):1840-1849. PubMed PMID: 27923948; PubMed Central PMCID: PMC5142086.

Anahtar MN, Bowman BA, Kwon DS. Efficient Nucleic Acid Extraction and 16S rRNA Gene Sequencing for Bacterial Community Characterization. J Vis Exp. 2016 Apr 14;(110). doi: 10.3791/53939. PubMed PMID: 27168460; PubMed Central PMCID: PMC4941931.

 

Sekar A, Bialas AR, de Rivera H, Davis A, Hammond TR, Kamitaki N, Tooley K, Presumey J, Baum M, Van Doren V, Genovese G, Rose SA, Handsaker RE; Schizophrenia Working Group of the Psychiatric Genomics Consortium, Daly MJ, Carroll MC, Stevens B, McCarroll SA. Schizophrenia risk from complex variation of complement  component 4. Nature. 2016 Jan 27. doi: 10.1038/nature16549. [Epub ahead of print] PubMed PMID: 26814963.

 

Baum ML. Patient Requests for Off-Label Bioprediction of Dementia. Camb Q Healthc Ethics. 2016 Oct;25(4):686-90. doi: 10.1017/S0963180116000402. PubMed PMID: 27634719.

 

Bell JS. A PIECE OF MY MIND. Osler in Jail. JAMA. 2016 Jun 21;315(23):2523-4.  doi: 10.1001/jama.2016.1823. PubMed PMID: 27327797.

 

Bell JS, Wilson RI. Behavior Reveals Selective Summation and Max Pooling among Olfactory Processing Channels. Neuron. 2016 Jun 30. pii: S0896-6273(16)30264-1. doi: 10.1016/j.neuron.2016.06.011. [Epub ahead of print] PubMed PMID: 27373835.

 

Bent EH, Gilbert LA, Hemann MT. A senescence secretory switch mediated by PI3K/AKT/mTOR activation controls chemoprotective endothelial secretory responses. Genes Dev. 2016 Aug 15;30(16):1811-21. doi: 10.1101/gad.284851.116. PubMed PMID: 27566778; PubMed Central PMCID: PMC5024680.

 

DeLaughter DM, Bick AG, Wakimoto H, McKean D, Gorham JM, Kathiriya IS, Hinson  JT, Homsy J, Gray J, Pu W, Bruneau BG, Seidman JG, Seidman CE. Single-Cell Resolution of Temporal Gene Expression during Heart Development. Dev Cell. 2016 Nov 21;39(4):480-490. doi: 10.1016/j.devcel.2016.10.001. Epub 2016 Nov 10. PubMed PMID: 27840107; PubMed Central PMCID: PMC5198784

 

Gonzalez Castro LN, Colorado RA, Botelho AA, Freitag SK, Rabinov JD, Silverman SB. Carotid-Cavernous Fistula: A Rare but Treatable Cause of Rapidly Progressive  Vision Loss. Stroke. 2016 Aug;47(8):e207-9. doi: 10.1161/STROKEAHA.116.013428. Epub 2016 Jul 12. PubMed PMID: 27406104

 

Masuda T, Wang X, Maeda M, Canver MC, Sher F, Funnell AP, Fisher C, Suciu M, Martyn GE, Norton LJ, Zhu C, Kurita R, Nakamura Y, Xu J, Higgs DR, Crossley M, Bauer DE, Orkin SH, Kharchenko PV, Maeda T. Transcription factors LRF and BCL11A  independently repress expression of fetal hemoglobin. Science. 2016 Jan 15;351(6270):285-9. doi: 10.1126/science.aad3312. PubMed PMID: 26816381.

 

Brendel C, Guda S, Renella R, Bauer DE, Canver MC, Kim YJ, Heeney MM, Klatt D, Fogel J, Milsom MD, Orkin SH, Gregory RI, Williams DA. Lineage-specific BCL11A knockdown circumvents toxicities and reverses sickle phenotype. J Clin Invest. 2016 Oct 3;126(10):3868-3878. doi: 10.1172/JCI87885. PubMed PMID: 27599293.

 

Pinello L, Canver MC, Hoban MD, Orkin SH, Kohn DB, Bauer DE, Yuan GC. Analyzing CRISPR genome-editing experiments with CRISPResso. Nat Biotechnol. 2016 Jul 12;34(7):695-7. doi: 10.1038/nbt.3583. PubMed PMID: 27404874.

 

Kim PG, Canver MC, Rhee C, Ross SJ, Harriss JV, Tu HC, Orkin SH, Tucker HO, Daley GQ. Interferon-α signaling promotes embryonic HSC maturation. Blood. 2016 Jul 14;128(2):204-16. doi: 10.1182/blood-2016-01-689281. Epub 2016 Apr 19. PubMed PMID: 27095787; PubMed Central PMCID: PMC4946201.

 

Canver MC, Orkin SH. Customizing the genome as therapy for the β-hemoglobinopathies. Blood. 2016 May 26;127(21):2536-45. doi: 10.1182/blood-2016-01-678128. Epub 2016 Apr 6. Review. PubMed PMID: 27053533; PubMed Central PMCID: PMC4882803.

 

Chang BJ, Samal AB, Vlach J, Fernandez TF, Brooke D, Prevelige PE Jr, Saad JS. Identification of the Calmodulin-Binding Domains of Fas Death Receptor. PLoS One. 2016 Jan 6;11(1):e0146493. doi: 10.1371/journal.pone.0146493. PubMed PMID: 26735300; PubMed Central PMCID: PMC4703387.

 

 

Zhang B, Chang K, Ramkissoon S, Tanguturi S, Bi WL, Reardon DA, Ligon KL, Alexander BM, Wen PY, Huang RY. Multimodal MRI features predict isocitrate dehydrogenase genotype in high-grade gliomas. Neuro Oncol. 2016 Jun 26. pii: now121. [Epub ahead of print] PubMed PMID: 27353503.

 

Chang K, Zhang B, Guo X, Zong M, Rahman R, Sanchez D, Winder N, Reardon DA, Zhao B, Wen PY, Huang RY. Multimodal imaging patterns predict survival in recurrent glioblastoma patients treated with bevacizumab. Neuro Oncol. 2016 May4. pii: now086. [Epub ahead of print] PubMed PMID: 27257279.

 

Pacold ME, Brimacombe KR, Chan SH, Rohde JM, Lewis CA, Swier LJ, Possemato R, Chen WW, Sullivan LB, Fiske BP, Cho S, Freinkman E, Birsoy K, Abu-Remaileh M, Shaul YD, Liu CM, Zhou M, Koh MJ, Chung H, Davidson SM, Luengo A, Wang AQ, Xu X,  Yasgar A, Liu L, Rai G, Westover KD, Vander Heiden MG, Shen M, Gray NS, Boxer MB, Sabatini DM. A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate. Nat Chem Biol. 2016 Jun;12(6):452-8. doi: 10.1038/nchembio.2070. Epub 2016 Apr 25. PubMed PMID: 27110680; PubMed Central PMCID: PMC4871733.

 

Pacold ME, Brimacombe KR, Chan SH, Rohde JM, Lewis CA, Swier LJ, Possemato R,  Chen WW, Sullivan LB, Fiske BP, Cho S, Freinkman E, Birsoy K, Abu MR, Shaul YD, Liu CM, Zhou M, Koh MJ, Chung H, Davidson SM, Luengo A, Wang AQ, Xu X, Yasgar A,  Liu L, Rai G, Westover KD, Heiden MG, Shen M, Gray NS, Boxer MB, Sabatini DM. Corrigendum: A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate. Nat Chem Biol. 2016 Jul 19;12(8):656. doi: 10.1038/nchembio0816-656. PubMed PMID: 27434767.

 

Chen WW, Freinkman E, Wang T, Birsoy K, Sabatini DM. Absolute Quantification of Matrix Metabolites Reveals the Dynamics of Mitochondrial Metabolism. Cell. 2016 Aug 25;166(5):1324-1337.e11. doi: 10.1016/j.cell.2016.07.040. PubMed PMID: 27565352; PubMed Central PMCID: PMC5030821.

 

Johnson SF, Cruz C, Greifenberg AK, Dust S, Stover DG, Chi D, Primack B, Cao S, Bernhardy AJ, Coulson R, Lazaro JB, Kochupurakkal B, Sun H, Unitt C, Moreau LA, Sarosiek KA, Scaltriti M, Juric D, Baselga J, Richardson AL, Rodig SJ, D'Andrea AD, Balmaña J, Johnson N, Geyer M, Serra V, Lim E, Shapiro GI. CDK12 Inhibition Reverses De Novo and Acquired PARP Inhibitor Resistance in BRCA Wild-Type and Mutated Models of Triple-Negative Breast Cancer. Cell Rep. 2016 Nov 22;17(9):2367-2381. doi: 10.1016/j.celrep.2016.10.077. PubMed PMID: 27880910; PubMed Central PMCID: PMC5176643

 

 

Roffman JL, Tanner AS, Eryilmaz H, Rodriguez-Thompson A, Silverstein NJ, Ho NF, Nitenson AZ, Chonde DB, Greve DN, Abi-Dargham A, Buckner RL, Manoach DS, Rosen BR, Hooker JM, Catana C. Dopamine D1 signaling organizes network dynamics underlying working memory. Sci Adv. 2016 Jun 3;2(6):e1501672. doi: 10.1126/sciadv.1501672. eCollection 2016 Jun. PubMed PMID: 27386561; PubMed Central PMCID: PMC4928887.

 

Chen KT, Izquierdo-Garcia D, Poynton CB, Chonde DB, Catana C. On the accuracy and reproducibility of a novel probabilistic atlas-based generation for calculation of head attenuation maps on integrated PET/MR scanners. Eur J Nucl Med Mol Imaging. 2016 Aug 29. [Epub ahead of print] PubMed PMID: 27573639.

 

Alshikho MJ, Zürcher NR, Loggia ML, Cernasov P, Chonde DB, Izquierdo Garcia D, Yasek JE, Akeju O, Catana C, Rosen BR, Cudkowicz ME, Hooker JM, Atassi N. Glial activation colocalizes with structural abnormalities in amyotrophic lateral sclerosis. Neurology. 2016 Dec 13;87(24):2554-2561. Epub 2016 Nov 11. PubMed PMID: 27837005; PubMed Central PMCID: PMC5207001.

 

Minhas P, Chu Y, Mata DA. Neuropathology: bridging psychiatry and neurology in medical education. Lancet Psychiatry. 2016 Feb;3(2):98-100. doi: 10.1016/S2215-0366(15)00517-9. PubMed PMID: 26851321.

 

Chu Y, Mitchell RN, Mata DA. Using exit competencies to integrate pathology into the undergraduate clinical clerkships. Hum Pathol. 2016 Jan;47(1):1-3. doi:  10.1016/j.humpath.2015.08.018. Epub 2015 Sep 21. PubMed PMID: 26482607.

 

Alotaibi AF, Hulou MM, Vestal M, Alkholifi F, Asgarzadeh M, Cote DJ, Bi WL, Dunn IF, Mekary RA, Smith TR. The Efficacy of Antibacterial Prophylaxis Against the Development of Meningitis After Craniotomy: A Meta-Analysis. World Neurosurg. 2016 Jun;90:597-603.e1. doi: 10.1016/j.wneu.2016.02.048. Epub 2016 Feb 26. PubMed PMID: 26921699.

 

Laws ER Jr, Iuliano SL, Cote DJ, Woodmansee W, Hsu L, Cho CH. A Benchmark for  Preservation of Normal Pituitary Function After Endoscopic Transsphenoidal Surgery for Pituitary Macroadenomas. World Neurosurg. 2016 Jul;91:371-5. doi: 10.1016/j.wneu.2016.04.059. Epub 2016 Apr 23. PubMed PMID: 27113402.

 

Cote DJ, Karhade AV, Larsen AM, Burke WT, Castlen JP, Smith TR. United States neurosurgery annual case type and complication trends between 2006 and 2013: An American College of Surgeons National Surgical Quality Improvement Program analysis. J Clin Neurosci. 2016 Sep;31:106-11. doi: 10.1016/j.jocn.2016.02.014. Epub 2016 May 12. PubMed PMID: 27183956.

 

Cote DJ, Karhade AV, Burke WT, Larsen AM, Smith TR. Risk factors for post-operative respiratory failure among 94,621 neurosurgical patients from 2006  to 2013: a NSQIP analysis. Acta Neurochir (Wien). 2016 Sep;158(9):1639-45. doi: 10.1007/s00701-016-2871-8. Epub 2016 Jun 23. PubMed PMID: 27339268

 

Larsen AM, Cote DJ, Karhade AV, Smith TR. Predictors of Stroke and Coma After  Neurosurgery: An ACS-NSQIP Analysis. World Neurosurg. 2016 Sep;93:299-305. doi: 10.1016/j.wneu.2016.06.020. Epub 2016 Jun 14. PubMed PMID: 27312388

 

Smith TR, Cote DJ, Jane JA Jr, Laws ER Jr. Physiological growth hormone replacement and rate of recurrence of craniopharyngioma: the Genentech National Cooperative Growth Study. J Neurosurg Pediatr. 2016 Oct;18(4):408-412. Epub 2016  Jun 10. PubMed PMID: 27286443.

 

PChaudhry NS, Raber MR, Cote DJ, Laws ER Jr. Spontaneous pituitary adenoma occurring after resection of a Rathke's cleft cyst. J Clin Neurosci. 2016 Nov;33:247-251. doi: 10.1016/j.jocn.2016.05.018. Epub 2016 Sep 3. PubMed PMID: 27600168 PMID: 27286443.

 

Cote DJ, Dubois HM, Karhade AV, Smith TR. Venous Thromboembolism in Patients Undergoing Craniotomy for Brain Tumors: A U.S. Nationwide Analysis. Semin Thromb  Hemost. 2016 Nov;42(8):870-876. Epub 2016 Oct 20. Review. PubMed PMID: 27764877.

 

Cote DJ, Dawood HY, Smith TR. Venous Thromboembolism in Patients with High-Grade Glioma. Semin Thromb Hemost. 2016 Nov;42(8):877-883. Epub 2016 Aug 30. Review. PubMed PMID: 27574964.

 

Yan SC, Hulou MM, Cote DJ, Roytowski D, Rutka JT, Gormley WB, Smith TR. International Defensive Medicine in Neurosurgery: Comparison of Canada, South Africa, and the United States. World Neurosurg. 2016 Nov;95:53-61. doi: 10.1016/j.wneu.2016.07.069. Epub 2016 Jul 28. PubMed PMID: 27476695.

 

Zaidi HA, Cote DJ, Dunn IF, Laws ER Jr. Predictors of aggressive clinical phenotype among immunohistochemically confirmed atypical adenomas. J Clin Neurosci. 2016 Dec;34:246-251. doi: 10.1016/j.jocn.2016.09.014. Epub 2016 Oct 17. PubMed PMID: 27765563.

 

Zaidi HA, Cote DJ, Burke WT, Castlen JP, Bi WL, Laws ER Jr, Dunn IF. Time Course of Symptomatic Recovery After Endoscopic Transsphenoidal Surgery for Pituitary Adenoma Apoplexy in the Modern Era. World Neurosurg. 2016 Dec;96:434-439. doi: 10.1016/j.wneu.2016.09.052. Epub 2016 Sep 20. PubMed PMID: 27663263.

 

Alshehri N, Cote DJ, Hulou MM, Alghamdi A, Alshahrani A, Mekary RA, Smith TR.  Venous thromboembolism prophylaxis in brain tumor patients undergoing craniotomy: a meta-analysis. J Neurooncol. 2016 Dec;130(3):561-570. Epub 2016 Sep 3. PubMed PMID: 27591773.

 

Cote DJ, Smith TR, Sandler CN, Gupta T, Bale TA, Bi WL, Dunn IF, De Girolami U, Woodmansee WW, Kaiser UB, Laws ER Jr. Functional Gonadotroph Adenomas: Case Series and Report of Literature. Neurosurgery. 2016 Dec;79(6):823-831. PubMed PMID: 26692108; PubMed Central PMCID: PMC4912468.

 

Abudayyeh OO, Gootenberg JS, Konermann S, Joung J, Slaymaker IM, Cox DB, Shmakov S, Makarova KS, Semenova E, Minakhin L, Severinov K, Regev A, Lander ES, Koonin EV, Zhang F. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector. Science. 2016 Jun 2. pii: aaf5573. [Epub ahead of  print] PubMed PMID: 27256883.

 

De Los Angeles A, Ferrari F, Xi R, Fujiwara Y, Benvenisty N, Deng H, Hochedlinger K, Jaenisch R, Lee S, Leitch HG, Lensch MW, Lujan E, Pei D, Rossant  J, Wernig M, Park PJ, Daley GQ. Corrigendum: Hallmarks of pluripotency. Nature. 2016 Mar 17;531(7594):400. doi: 10.1038/nature16470. Epub 2015 Dec 16. PubMed PMID: 26675727.

 

Del Castillo-Calcáneo J, Donoghue JA. A Novel Method for 3-Dimensional Printing a Brain That Feels and Looks Like One: The Next Step in the Search of the Perfect Neurosurgical Simulator. World Neurosurg. 2016 Jul;91:620-2. doi: 10.1016/j.wneu.2016.03.086. Epub 2016 Apr 5. PubMed PMID: 27062917.

 

Barrett KT, Dosumu-Johnson RT, Daubenspeck JA, Brust RD, Kreouzis V, Kim JC, Li A, Dymecki SM, Nattie EE. Partial Raphe Dysfunction in Neurotransmission Is Sufficient to Increase Mortality after Anoxic Exposures in Mice at a Critical Period in Postnatal Development. J Neurosci. 2016 Apr 6;36(14):3943-53. doi: 10.1523/JNEUROSCI.1796-15.2016. PubMed PMID: 27053202; PubMed Central PMCID: PMC4821907.

 

Ataman B, Boulting GL, Harmin DA, Yang MG, Baker-Salisbury M, Yap EL, Malik AN, Mei K, Rubin AA, Spiegel I, Durresi E, Sharma N, Hu LS, Pletikos M, Griffith EC, Partlow JN, Stevens CR, Adli M, Chahrour M, Sestan N, Walsh CA, Berezovskii
VK, Livingstone MS, Greenberg ME. Evolution of Osteocrin as an activity-regulated factor in the primate brain. Nature. 2016 Nov 10;539(7628):242-247. doi: 10.1038/nature20111. PubMed PMID: 27830782.

 

Zangi L, Oliveira MS, Ye LY, Ma Q, Sultana N, Hadas Y, Chepurko E, Später D, Zhou B, Chew WL, Ebina W, Abrial M, Wang QD, Pu WT, Chien KR. An IGF1R-Dependent  Pathway Drives Epicardial Adipose Tissue Formation After Myocardial Injury. Circulation. 2016 Nov 1. pii: CIRCULATIONAHA.116.022064. [Epub ahead of print] PubMed PMID: 27803039.

 

Powers JT, Tsanov KM, Pearson DS, Roels F, Spina CS, Ebright R, Seligson M, de Soysa Y, Cahan P, Theißen J, Tu HC, Han A, Kurek KC, LaPier GS, Osborne JK, Ross  SJ, Cesana M, Collins JJ, Berthold F, Daley GQ. Multiple mechanisms disrupt the let-7 microRNA family in neuroblastoma. Nature. 2016 Jul 6;535(7611):246-51. doi: 10.1038/nature18632. PubMed PMID: 27383785; PubMed Central PMCID: PMC4947006.

 

Jordan NV, Bardia A, Wittner BS, Benes C, Ligorio M, Zheng Y, Yu M, Sundaresan TK, Licausi JA, Desai R, O'Keefe RM, Ebright RY, Boukhali M, Sil S, Onozato ML, Iafrate AJ, Kapur R, Sgroi D, Ting DT, Toner M, Ramaswamy S, Haas W, Maheswaran S, Haber DA. HER2 expression identifies dynamic functional states within circulating breast cancer cells. Nature. 2016 Sep 1;537(7618):102-106. doi: 10.1038/nature19328. PubMed PMID: 27556950; PubMed Central PMCID: PMC5161614.

 

Eshel N, Tian J, Bukwich M, Uchida N. Dopamine neurons share common response function for reward prediction error. Nat Neurosci. 2016 Mar;19(3):479-86. doi: 10.1038/nn.4239. Epub 2016 Feb 8. PubMed PMID: 26854803; PubMed Central PMCID: PMC4767554.

 

Eshel N, Marcovitz DE, Stern TA. Psychiatric Consultations in Less-Than-Private Places: Challenges and Unexpected Benefits of Hospital Roommates. Psychosomatics. 2016 Jan-Feb;57(1):97-101. doi: 10.1016/j.psym.2015.09.007. PubMed PMID: 26671624; PubMed Central PMCID: PMC4724323.

 

Evrony GD. A PIECE OF MY MIND. A Wild Rotation. JAMA. 2016 Aug 16;316(7):713-4. doi: 10.1001/jama.2016.4994. PubMed PMID: 27533153.

 

Evrony GD. One brain, many genomes. Science. 2016 Nov 4;354(6312):557-558. PubMed PMID: 27811258.

 

Evrony GD, Lee E, Park PJ, Walsh CA. Resolving rates of mutation in the brain using single-neuron genomics. Elife. 2016 Feb 22;5. pii: e12966. doi: 10.7554/eLife.12966. PubMed PMID: 26901440; PubMed Central PMCID: PMC4805530.

 

Finlayson SG, Levy M, Reddy S, Rubin DL. Toward rapid learning in cancer treatment selection: An analytical engine for practice-based clinical data. J Biomed Inform. 2016 Apr;60:104-13. doi: 10.1016/j.jbi.2016.01.005. Epub 2016 Feb  2. PubMed PMID: 26836975; PubMed Central PMCID: PMC4836997.

 

Garcia-Beltran WF, Hölzemer A, Martrus G, Chung AW, Pacheco Y, Simoneau CR, Rucevic M, Lamothe-Molina PA, Pertel T, Kim TE, Dugan H, Alter G, Dechanet-Merville J, Jost S, Carrington M, Altfeld M. Open conformers of HLA-F

are high-affinity ligands of the activating NK-cell receptor KIR3DS1. Nat Immunol. 2016 Jul 25. doi: 10.1038/ni.3513. [Epub ahead of print] PubMed PMID: 27455421.

 

Lunemann S, Martrus G, Hölzemer A, Chapel A, Ziegler M, Körner C, Garcia Beltran W, Carrington M, Wedemeyer H, Altfeld M. Sequence variations in HCV core-derived epitopes alter binding of KIR2DL3 to HLA-C∗03:04 and modulate NK cell function. J Hepatol. 2016 Aug;65(2):252-8. doi: 10.1016/j.jhep.2016.03.016.  Epub 2016 Apr 4. PubMed PMID: 27057987; PubMed Central PMCID: PMC4955726.

 

Scully EP, Lockhart A, Garcia-Beltran W, Palmer CD, Musante C, Rosenberg E, Allen TM, Chang JJ, Bosch RJ, Altfeld M. Innate immune reconstitution with suppression of HIV-1. JCI Insight. 2016 Mar 17;1(3):e85433. PubMed PMID: 27158667; PubMed Central PMCID: PMC4855526.

 

Martrus G, Niehrs A, Cornelis R, Rechtien A, García-Beltran W, Lütgehetmann M, Hoffmann C, Altfeld M. Kinetics of HIV-1 Latency Reversal Quantified on the Single-Cell Level Using a Novel Flow-Based Technique. J Virol. 2016 Sep 29;90(20):9018-28. doi: 10.1128/JVI.01448-16. Print 2016 Oct 15. PubMed PMID: 27466424; PubMed Central PMCID: PMC5044848.

 

Garza-Mayers AC, McClurkin M, Smith GP. Review of treatment for discoid lupus  erythematosus. Dermatol Ther. 2016 Jul;29(4):274-83. doi: 10.1111/dth.12358. Epub 2016 Apr 12. Review. PubMed PMID: 27073142.

 

Tang M, Zhao R, van de Velde H, Tross (Ge) JG, Mitsiades C, Viselli S, Neuwirth R,  Esseltine DL, Anderson K, Ghobrial IM, San Miguel JF, Richardson PG, Tomasson MH, Michor F. Myeloma Cell Dynamics in Response to Treatment Supports a Model of Hierarchical Differentiation and Clonal Evolution. Clin Cancer Res. 2016 Aug 15;22(16):4206-14. doi: 10.1158/1078-0432.CCR-15-2793. PubMed PMID: 27006493; PubMed Central PMCID: PMC4987182.

 

Gibson WJ, Hoivik EA, Halle MK, Taylor-Weiner A, Cherniack AD, Berg A, Holst F, Zack TI, Werner HM, Staby KM, Rosenberg M, Stefansson IM, Kusonmano K, Chevalier A, Mauland KK, Trovik J, Krakstad C, Giannakis M, Hodis E, Woie K, Bjorge L, Vintermyr OK, Wala JA, Lawrence MS, Getz G, Carter SL, Beroukhim R, Salvesen HB. The genomic landscape and evolution of endometrial carcinoma

progression and abdominopelvic metastasis. Nat Genet. 2016 Aug;48(8):848-55. doi: 10.1038/ng.3602. Epub 2016 Jun 27. PubMed PMID: 27348297; PubMed Central PMCID: PMC4963271.

 

Holst F, Hoivik EA, Gibson WJ, Taylor-Weiner A, Schumacher SE, Asmann YW, Grossmann P, Trovik J, Necela BM, Thompson EA, Meyerson M, Beroukhim R, Salvesen  HB, Cherniack AD. Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth. Sci Rep. 2016 Jun 24;6:27960. doi: 10.1038/srep27960. PubMed PMID: 27338572; PubMed Central PMCID: PMC4919648.

 

Holst F, Hoivik EA, Gibson WJ, Taylor-Weiner A, Schumacher SE, Asmann YW, Grossmann P, Trovik J, Necela BM, Thompson EA, Meyerson M, Beroukhim R, Salvesen  HB, Cherniack AD. Recurrent hormone-binding domain truncated ESR1 amplifications  in primary endometrial cancers suggest their implication in hormone independent growth. Sci Rep. 2016 May 10;6:25521. doi: 10.1038/srep25521. PubMed PMID: 27160768; PubMed Central PMCID: PMC4861919.

 

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Sheldon J. J. Kwok, Ivan A. Kuznetsov, Moonseok Kim, Myunghwan Choi, Giuliano Scarcelli, and Seok Hyun Yun, "Selective two-photon collagen crosslinking in situ measured by Brillouin microscopy," Optica 3, 469-472 (2016)

 

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