Publications

2002 - 2004

[A-L]      [M-Z]

Loureiro RM, Maharaj AS, Dankort D, Muller WJ, D'Amore PA. ErbB2 overexpression in mammary cells upregulates VEGF through the core promoter. Biochem Biophys Res Commun. 2005 Jan 14;326(2):455-65.

Daniels MJ, Marson A, Venkitaraman AR. PML bodies control the nuclear dynamics and function of the CHFR mitotic checkpoint protein. Nat Struct Mol Biol. 2004 Nov;11(11):1114-21.

Mierau SB, Meredith RM, Upton AL, Paulsen O. Dissociation of experience-dependent and -independent changes in excitatory synaptic transmission during development of barrel cortex. Proc Natl Acad Sci U S A.2004 Oct 18 [Epub ahead of print]

Du J, Miller AJ, Widlund HR, Horstmann MA, Ramaswamy S, Fisher DE. MLANA/MART1 and SILV/PMEL17/GP100 Are Transcriptionally Regulated by MITF in Melanocytes and Melanoma. Am J Pathol. 2003 Jul;163(1):333-43.                

Du J, Miller AJ, Widlund HR, Horstmann MA, Ramaswamy S, Fisher DE. MLANA/MART1 and SILV/PMEL17/GP100 Are Transcriptionally Regulated by MITF in Melanocytes and Melanoma. Am J Pathol. 2003 Jul;163(1):333-43.

Miller AJ, Du J, Rowan S, Hershey CL, Widlund HR, Fisher DE.  Transcriptional regulation of the melanoma prognostic marker melastatin (TRPM1) by MITF in melanocytes and melanoma. Cancer Res. 2004. Jan 15;64(2):509-16.

Mills CE, Robins JM, Lipsitch M. Transmissibility of 1918 pandemic influenza. Nature. 2004 Dec 16;432(7019):904-6.

McDonald WH, Ohi R, Miyamoto DT, Mitchison TJ, and Yates JR 3rd. Comparison of three directly coupled HPLC MS/MS strategies for identification of proteins from complex mixtures: single-dimensional LC-MS/MS, 2-phase MudPIT, and 3-phase MudPIT.  International Journal of Mass Spectrometry. 2002; 219, 245-251.

Gupta A, Sanada, K, Miyamoto DT, Rovelstad S, Nadarajah B, Pearlman AL, Brunstrom J, Tsai L-H. Layering defect in p35 deficiency is linked to improper neuronal-glial interaction in radial migration. Nat Neurosci. 2003 Dec;6(12):1284-91.

Miyamoto DT*, Perlman ZE*, Mitchison TJ, Shirasu-Hiza M.  Dynamics of the mitotic spindle - potential therapeutic targets.  Prog Cell Cycle Res. 2003;5:349-60.

Groen AC, Cameron LA, Coughlin M, Miyamoto DT, Mitchison TJ, Ohi R. XRHAMM Functions in Ran-Dependent Microtubule Nucleation and Pole Formation during Anastral Spindle Assembly. Curr Biol. 2004 Oct 26;14(20):1801-11.

Molyneaux BJ, Hasselmo ME. GABA(B) Presynaptic Inhibition Has an In Vivo Time Constant Sufficiently Rapid to Allow Modulation at Theta Frequency.  J Neurophysiol. 2002 Mar;87(3):1196-205.

Motyckova G, Fisher DE. Pycnodysostosis: role and regulation of cathepsin K in osteoclast function and human disease. Curr Mol Med. 2002 Aug;2(5):407-21. Review.

McGill GG, Horstmann M, Widlund HR, Du J, Motyckova G, Nishimura EK, Lin YL, Ramaswamy S, Avery W, Ding HF, Jordan SA, Jackson IJ, Korsmeyer SJ, Golub TR, Fisher DE. Bcl2 regulation by the melanocyte master regulator Mitf modulates lineage survival and melanoma cell viability. Cell. 2002 Jun 14;109(6):707-18.

Davis IJ, Hsi BL, Arroyo JD, Vargas SO, Yeh YA, Motyckova G, Valencia P, Perez-Atayde AR, Argani P, Ladanyi M, Fletcher JA, Fisher DE. Cloning of an Alpha-TFEB fusion in renal tumors harboring the t(6;11)(p21;q13) chromosome translocation.  Proc Natl Acad Sci U S A. 2003 May 13;100(10):6051-6. Epub 2003 Apr 28.

Murnick JG, Dube G, Krupa B, Liu G. High-resolution iontophoresis for single-synapse stimulation. J Neurosci Methods. 2002 Apr 30;116(1):65-75.

Dror RO, Murnick JG, Rinaldi NJ, Marinescu VD, Rifkin RM, Young RA.  Bayesian Estimation of Transcript Levels Using a General Model of Array Measurement Noise.  J Comput Biol. 2003;10(3-4):433-452.

Bindschadler M, Osborn EA, Dewey CF Jr, McGrath JL. A mechanistic model of the actin cycle. Biophys J. 2004 May;86(5):2720-39.

Jim K, Parmar K, Singh M, Tavazoie S. A cross-genomic approach for systematic mapping of phenotypic traits to genes. Genome Res. 2004 Jan;14(1):109-15.

Roeder RKW, Rapoport BI, Evans TE. Explicit calculations of homoclinic tangles in tokamaks. The Physics of Plasmas. September 2003 10 (9): 3796-3799.

Pavlenko I, Rapoport BI, Weyssow B, Carati D. Hamiltonian mapping of magnetic reconnection during the crash stage of the sawtooth instability. The Physics of Plasmas April 2003 (4):1083-1091.

Evans EE, Roeder RKW, Carter JA, Rapoport BI. Homoclinic tangles, bifurcations and edge stochasticity in diverted tokamaks. Contributions to Plasma Physics April 2004 44 (1-3): 235-240

Puigserver P, Rhee J, Donovan J, Walkey CJ, Yoon JC, Oriente F, Kitamura Y, Altomonte J, Dong H, Accili D, Spiegelman BM. Insulin-regulated hepatic gluconeogenesis through FOXO1-PGC-1 alpha interaction. Nature. 2003 May 29;423(6939):550-5.

Fan M, Rhee J, St-Pierre J, Handschin C, Puigserver P, Lin J, Jaeger S, Erdjument-Bromage H, Tempst P, Spiegelman BM. Suppression of mitochondrial respiration through recruitment of p160 myb binding protein to PGC-1alpha: modulation by p38 MAPK. Genes Dev. 2004 Feb 1;18(3):278-89.

Lin J, Tarr PT, Yang R, Rhee J, Puigserver P, Newgard CB, Spiegelman BM. PGC-1beta in the regulation of hepatic glucose and energy metabolism. J Biol Chem. 2003 Aug 15;278(33):30843-8.

Yoon JC, Xu G, Deeney JT, Yang SN, Rhee J, Puigserver P, Levens AR, Yang R, Zhang CY, Lowell BB, Berggren PO, Newgard CB, Bonner-Weir S, Weir G, Spiegelman BM. Suppression of beta cell energy metabolism and insulin release by PGC-1alpha. Dev Cell. 2003 Jul;5(1):73-83.

Handschin C, Rhee J, Lin J, Tarr PT, Spiegelman BM. An autoregulatory loop controls peroxisome proliferator-activated receptor gamma coactivator 1alpha expression in muscle. Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7111-6.

Handschin C, Rhee J, Lin J, Tarr PT, Spiegelman BM. An autoregulatory loop controls peroxisome proliferator-activated receptor gamma coactivator 1alpha expression in muscle. Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7111-6.

Rhee J, Inoue Y, Yoon JC, Puigserver P, Fan M, Gonzalez FJ, Spiegelman BM. Regulation of hepatic fasting response by PPARgamma coactivator-1alpha (PGC-1): requirement for hepatocyte nuclear factor 4alpha in gluconeogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4012-7.

Moore SA, Ronimus RS, Roberson RS, and Morgan HW. The Structure of a Pyrophosphate-Dependent Phosphofructokinase from the Lyme Disease Spirochete Borrelia burgdorferi. Structure. 2002 May 3;10(5):659.

Goodwin TE, Brown FD, Counts RW, Dowdy NC, Fraley PL, Hughes RA, Liu DZ, Mashburn CD, Rankin JD, Roberson RS, Wooley KD, Rasmussen EL, Riddle SW, Riddle HS, Schulz S. African elephant sesquiterpenes. II. Identification and synthesis of new derivatives of 2,3-dihydrofarnesol. J Nat Prod. 2002 Sep;65(9):1319-22.                                               

Dymecki SM, Rodriguez CI, Awatramani RB. Switching on lineage tracers using site-specific recombination. Methods Mol Biol. 2002;185:309-34.

Awatramani R, Soriano P, Rodriguez CI, Mai JJ, Dymecki SM. Cryptic Boundaries in Roof Plate and Chorid Plexus Identified by Intersectional Gene Activation. Nat Genet. 2003 Sep;35(1):70-5.

Tsai KY, MacPherson D, Rubinson DA, Crowley D, Jacks T. ARF is not required for apoptosis in Rb mutant mouse embryos. Curr Biol. 2002 Jan 22;12(2):159-63.

Loureiro JJ, Rubinson DA, Bear JE, Baltus GA, Kwiatkowski AV, Gertler FB. Critical Roles of Phosphorylation and Actin Binding Motifs, but Not the Central Proline-rich Region, for Ena/Vasodilator-stimulated Phosphoprotein (VASP) Function during Cell Migration. Mol Biol Cell. 2002 Jul;13(7):2533-46.

Tsai KY, MacPherson D, Rubinson DA, Nikitin AY, Bronson R, Mercer KL, Crowley D, Jacks T. ARF mutation accelerates pituitary tumor development in Rb+/- mice. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16865-70.

Rubinson DA, Dillon CP, Kwiatkowski AV, Sievers C, Yang L, Kopinja J, Rooney DL, Ihrig MM, McManus MT, Gertler FB, Scott ML, Van Parijs L. A lentivirus-based system to functionally silence genes in primary mammalian cells, stem cells and transgenic mice by RNA interference. Nat Genet. 2003 Mar;33(3):401-6. Epub 2003 Feb 18. Erratum in: Nat Genet. 2003 Jun;34(2):231.

Krause M, Leslie JD, Stewart M, Lafuente EM, Valderrama F, Jagannathan R, Strasser GA, Rubinson DA, Liu H, Way M, Yaffe MB, Boussiotis VA, Gertler FB. Lamellipodin, an Ena/VASP Ligand, Is Implicated in the Regulation of Lamellipodial Dynamics. Dev Cell. 2004 Oct;7(4):571-83.

Chakshusmathi G, Kim SD, Rubinson DA, Wolin SL. A La protein requirement for efficient pre-tRNA folding. EMBO J. 2003 Dec 15;22(24):6562-72.

Bravata DM, McDonald KM, Smith WM, Rydzak C, Szeto H, Buckeridge DL, Haberland C, Owens DK. Systematic review: surveillance systems for early detection of bioterrorism-related diseases. Ann Intern Med. 2004 Jun 1;140(11):910-22. Review.

Bravata DM, McDonald KM, Szeto H, Smith WM, Rydzak C, Owens DK. A conceptual framework for evaluating information technologies and decision support systems for bioterrorism preparedness and response. Med Decis Making. 2004 Mar-Apr;24(2):192-206.

Bravata DM, McDonald K, Owens DK, Buckeridge D, Haberland C, Rydzak C, Schleinitz M, Smith WM, Szeto H, Wilkening D, Musen M, Duncan BW, Nouri B, Dangiolo MB, Liu H, Shofer S, Graham J, Davies S. Bioterrorism preparedness and response: use of information technologies and decision support systems. Evid Rep Technol Assess (Summ). 2002 Jun;(59):1-8

Gould MK, Kuschner WG, Rydzak CE, Maclean CC, Demas AN, Shigemitsu H, Chan JK, Owens DK. Test performance of positron emission tomography and computed tomography for mediastinal staging in patients with non-small-cell lung cancer: a meta-analysis. Annals of Internal Medicine. 2003 Dec 2; 139(11):879-92. Review.

Gould MK, Sanders GD, Barnett PG, Rydzak CE, Maclean CC, McClellan MB, Owens DK. Cost-effectiveness of alternative management strategies for patients with solitary pulmonary nodules. Annals of Internal Medicine. 2003 May 6;138(9):724-35.

Brown SP, Safo PK, Regehr WG. Endocannabinoids inhibit transmission at granule cell to Purkinge cell synapses by modulating three types of presnynaptic calcium channels. J Neurosci. 2004 Jun 16;24(24):57623-31. 

Seeburg DP, Liu X, Chen C. Frequency-dependent modulation of retinogeniculate transmission by serotonin. J Neurosci. 2004 Dec 1;24(48):10950-62.

Zhu PP, Patterson A, Stadler J, Seeburg DP, Sheng M, Blackstone C. Intra- and intermolecular domain interactions of the C-terminal GTPase effector domain of the multimeric dynamin-like GTPase Drp1. J Biol Chem. 2004 Aug 20;279(34):35967-74. Epub 2004 Jun 18.

Blackstone C, Roberts RG, Seeburg DP, Sheng M. Interaction of the deafness-dystonia protein DP/TIMM8a with the signal transduction adaptor molecule STAM1. Biochem Biophys Res Commun. 2003 May 30;305(2):345-52.    

Batson A, Glass S, Seiguer E. "Economics of Vaccines: From Vaccine Candidate to Commercialized Product", in The Vaccine Book, Barry R. Bloom and Paul-Henri Lambert, eds., Academic Press, 2002.

Shapiro K, Caramazza A. The representation of grammatical categories in the brain. Trends Cogn Sci. 2003 May;7(5):201-206.

Shapiro K, Caramazza A. Grammatical processing of nouns and verbs in left frontal cortex? Neuropsychologia. 2003;41(9):1189-98. 

Shapiro K, Caramazza A. Looming a loom: evidence for independent access to grammatical and phonological properties in verb retrieval .  J Neurolinguistics. 2003; 16 (2-3): 85-112. 

Oliveri M, Finocchiaro C, Shapiro K, Gangitano M, Caramazza A, Pascual-Leone A. All talk and no action: a transcranial magnetic stimulation study of motor cortex activation during action word production. J Cogn Neurosci. 2004 Apr;16(3):374-81.

Weber G, Shendure J, Tanenbaum DM, Church GM, Meyerson M. Identification of foreign gene sequences by transcript filtering against the human genome. Nat Genet. 2002 Feb;30(2):141-2.

Shendure J, Church GM. Computational discovery of sense-antisense transcription in the human and mouse genomes.Genome Biol. 2002 Aug 22;3(9):RESEARCH0044. Epub 2002 Aug 22. 

Mitra RD, Butty VL, Shendure J, Williams BR, Housman DE, Church GM. Digital genotyping and haplotyping with polymerase colonies. Proc Natl Acad Sci U S A. 2003 May 13;100(10):5926-31.               

Zhu J*, Shendure J*, Mitra RD, Church GM. Single molecule profiling of alternative pre-mRNA splicing. Science. 2003 Aug 8;301(5634):836-8. (* = equal contributors)

Mitra RD, Shendure J, Olejnik J, Olejnik EK, Church GM. Fluorescent in situ sequencing on polymerase colonies. Anal Biochem. 2003 Sep 1;320(1):55-65.

Shendure J, Mitra RD, Varma C, Church GM. Advanced sequencing technologies: methods and goals. Nat Rev Genet. 2004 May;5(5):335-44. Review.

Sommers BD. Economics of antibiotic administration. Crit Care Nurs Clin North Am. 2003 Mar;15(1):89-96, ix. Review.

Cohen T, Sommers B, Murray M. The effect of drug resistance on the fitness of Mycobacterium tuberculosis. Lancet Infect Dis. 2003 Jan;3(1):13-21. Review.

Chao W, Huynh KD, Spencer RJ, Davidow LS, Lee JT. CTCF, a candidate trans-acting factor for X-inactivation choice. Science. 2002 Jan 11;295(5553):345-7.      

Gilliland G, Cools J, Stover EH, Wlodarska I, Marynen P. FIP1L1-PDGFRalpha in hypereosinophilic syndrome and mastocytosis. Hematol J. 2004;5 Suppl 3:S133-7.

Cools J, Stover EH, Wlodarska I, Marynen P, Gilliland DG. The FIP1L1-PDGFRalpha kinase in hypereosinophilic syndrome and chronic eosinophilic leukemia.Curr Opin Hematol. 2004 Jan;11(1):51-7. Review.

Bachoo RM, Maher EA, Ligon KL, Sharpless NE, Chan SS, You MJ, Tang Y, DeFrances J, Stover E, Weissleder R, Rowitch DH, Louis DN, DePinho RA. Epidermal growth factor receptor and Ink4a/Arf: convergent mechanisms governing terminal differentiation and transformation along the neural stem cell to astrocyte axis. Cancer Cell. 2002 Apr;1(3):269-77.

Stover EH,
Borthwick KJ, Bavalia C, Eady N, Fritz DM, Rungroj N, Giersch AB, Morton CC, Axon PR, Akil I, Al-Sabban EA, Baguley DM, Bianca S, Bakkaloglu A, Bircan Z, Chauveau D, Clermont MJ, Guala A, Hulton SA, Kroes H, Li Volti G, Mir S, Mocan H, Nayir A, Ozen S, Rodriguez Soriano J, Sanjad SA, Tasic V, Taylor CM, Topaloglu R, Smith AN, Karet FE. Novel ATP6V1B1 and ATP6V0A4 mutations in autosomal recessive distal renal tubular acidosis with new evidence for hearing loss.J Med Genet. 2002 Nov;39(11):796-803.        

Cools J, DeAngelo DJ, Gotlib J, Stover EH, Legare RD, Cortes J, Kutok J, Clark J, Galinsky I, Griffin JD, Cross NC, Tefferi A, Malone J, Alam R, Schrier SL, Schmid J, Rose M, Vandenberghe P, Verhoef G, Boogaerts M, Wlodarska I, Kantarjian H, Marynen P, Coutre SE, Stone R, Gilliland DG. A tyrosine kinase created by fusion of the PDGFRA and FIP1L1 genes as a therapeutic target of imatinib in idiopathic hypereosinophilic syndrome. N Engl J Med. 2003 Mar 27;348(13):1201-14.

Cools J, Stover EH, Boulton CL, Gotlib J, Legare RD, Amaral SM, Curley DP, Duclos N, Rowan R, Kutok JL, Lee BH, Williams IR, Coutre SE, Stone RM, DeAngelo DJ, Marynen P, Manley PW, Meyer T, Fabbro D, Neuberg D, Weisberg E, Griffin JD, Gilliland DG. PKC412 overcomes resistance to imatinib in a murine model of FIP1L1-PDGFRa-induced myeloproliferative disease. Cancer Cell. 2003 May 3(5):459-469.

Saxena S, Yuan P, Dhar SK, Senga T, Takeda D, Robinson H, Kornbluth S, Swaminathan K, Dutta A. A dimerized coiled-coil domain and an adjoining part of geminin interact with two sites on Cdt1 for replication inhibition. Mol Cell. 2004 Jul 23;15(2):245-58.

Entingh AJ, Taniguchi CM, Kahn CR.  Bi-directional regulation of brown fat adipogenesis by the insulin receptor. J Biol Chem. 2003 Aug 29;278(35):33377-83.

Tibbetts MD , Shiozaki EN, Gu L, McDonald ER 3rd, El-Deiry WS, Shi Y. Crystal structure of a FYVE-type zinc finger domain from the caspase regulator CARP2. Structure (Camb). 2004 Dec;12(12):2257-63.

Gu TL*, Tothova Z*, Scheijen B, Griffin JD, Gilliland DG, Sternberg DW. NPM-ALK fusion kinase of anaplastic large-cell lymphoma regulates survival and proliferative signaling through modulation of FOXO3a. Blood. 2004 Jun 15;103(12):4622-9. Epub 2004 Feb 12.

Tran H, Brunet A, Grenier JM, Datta SR, Fornace AJ Jr, DiStefano PS, Chiang LW, Greenberg ME. DNA repair pathway stimulated by the forkhead transcription factor FOXO3a through the Gadd45 protein. Science. 2002 Apr 19;296(5567):530-4.            

Tran H, Brunet A, Griffith EC, Greenberg ME.  The many forks in FOXO's roadSci STKE. 2003 Mar 4;2003(172):RE5                   

Brunet A, Sweeney LB, Sturgill JF, Chua KF, Greer PL, Lin Y, Tran H, Ross SE, Mostoslavsky R, Cohen HY, Hu LS, Cheng HL, Jedrychowski MP, Gygi SP, Sinclair DA, Alt FW, Greenberg ME.  Stress-Dependent Regulation of FOXO Transcription Factors by the SIRT1 Deacetylase. Science. 2004; Feb 19.

Lahann J, Mitragotri S, Tran TN, Kaido H, Sundaram J, Choi IS, Hoffer S, Somorjai GA, Langer R. A reversibly switching surface. Science. 2003 Jan 17;299(5605):371-4.

Suh KY, Yang JM, Khademhosseini A, Berry D, Tran TN, Park H, Langer R. Characterization of chemisorbed hyaluronic acid directly immobilized on solid substrates.J Biomed Mater Res. 2004 Oct 14 [Epub ahead of print]

Perron MJ, Stremlau M, Song B, Ulm W, Mulligan RC, Sodroski J. TRIM5alpha mediates the postentry block to N-tropic murine leukemia viruses in human cells. Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11827-32.
                               
Vafai, SB, Stock, JB. Protein phosphatase 2A methylation: a link between elevated plasma homocysteine and Alzheimer's Disease. FEBS Lett. 2002 May 8;518(1-3):1-4.      

Gozani O, Karuman P, Jones DR, Ivanov D, Cha J, Lugovskoy AA, Baird CL, Zhu H, Field SJ, Lessnick SL, Villasenor J, Mehrotra B, Chen J, Rao VR, Brugge JS, Ferguson CG, Payrastre B, Myszka DG, Cantley LC, Wagner G, Divecha N, Prestwich GD, Yuan J. The PHD finger of the chromatin-associated protein ING2 functions as a nuclear phosphoinositide receptor.  Cell. 2003 Jul 11;114(1):99-111.

Dela Cruz CS, Lee Y, Viswanathan SR, El-Guindy AS, Gerlach J, Nikiforow S, Shedd D, Gradoville, L and G Miller. N-linked glycosylation is required for optimal function of Kaposi's sarcoma herpesvirus-encoded, but not cellular, interleukin 6. J Exp Med. 2004 Feb 16;199(4):503-14.

Alkhalil A, Cohn JV, Wagner MA, Cabrera JS, Rajapandi T, Desai SA. Plasmodium falciparum likely encodes the principal anion channel on infected human erythrocytes. Blood. 2004 Dec 15;104(13):4279-86. Epub 2004 Aug 19.

Cohn JV, Alkhalil A, Wagner MA, Rajapandi T, Desai SA. Extracellular lysines on the plasmodial surface anion channel involved in Na+ exclusion. Mol Biochem Parasitol. 2003 Nov;132(1):27-34.

Wagner MA, Andemariam B, Desai SA. A two-compartment model of osmotic lysis in Plasmodium falciparum-infected erythrocytes. Biophys J. 2003 Jan;84(1):116-23.

Wang VE, Tantin D, Chen J, Sharp PA. B cell development and immunoglobulin transcription in Oct-1-deficient mice. Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):2005-10.

Nogueira ML, Wang VE, Tantin D, Sharp PA, Kristie TM. Herpes simplex virus infections are arrested in Oct-1-deficient cells. Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1473-8.

Wang VE, Schmidt T, Chen J, Sharp PA, Tantin D. Embryonic lethality, decreased erythropoiesis, and defective octamer-dependent promoter activation in Oct-1-deficient mice. Mol Cell Biol. 2004 Feb;24(3):1022-32

Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH, Cepko CL. Genomic analysis of mouse retinal development. PLoS Biol. 2004 Sep;2(9):E247

Michaelson J, Satija S, Moore R, Weber G, Halpern E, Garland A, Puri D, Kopans DB. The pattern of breast cancer screening utilization and its consequences. Cancer. 2002 Jan 1;94(1):37-43.

Weber G*
, Shendure J*, Tanenbaum DM, Church GM, Meyerson M. Identification of foreign gene sequences by transcript filtering against the human genome. Nat Genet. 2002 Feb;30(2):141-2.

Weber G, Vinterbo S, Ohno-Machado L. Building an asynchronous web-based tool for machine learning classification. Proc AMIA Symp. 2002:869-73.

Col NF, Fortin JM, Weber G, et al. Using the Web to Promote Smoking Cessation and Health for College-Aged Women. Educational Resources Information Center. Clearinghouse Number JC020766: 2002.

Michaelson JS, Silverstein M, Wyatt J, Weber G, Moore R, Halpern E, Kopans DB, Hughes K. Predicting the survival of patients with breast carcinoma using tumor size. Cancer. 2002 Aug 15;95(4):713-23.               

Xu Y, Stange-Thomann N, Weber G, Bo R, Dodge S, David RG, Foley K, Beheshti J, Harris NL, Birren B, Lander ES, Meyerson M. Pathogen discovery from human tissue by sequence-based computational subtraction. Genomics. 2003 Mar;81(3):329-35.                              

Michaelson JS, Satija S, Moore R, Weber G, Halpern E, Garland A, Kopans DB. Estimates of Breast Cancer Growth Rate and Sojourn Time from Screening Database Information. Journal of Women's Imaging 2003;5(1):11-19.

Col NF, Weber G, Stiggelbout A, Chuo J, D'Agostino R, Corso P. Short-term menopausal hormone therapy for symptom relief: an updated decision model. Arch Intern Med. 2004 Aug 9-23;164(15):1634-40.

Weber G, Vinterbo S, Ohno-Machado L. Multivariate selection of genetic markers in diagnostic classification. Artif Intell Med. 2004 Jun;31(2):155-67.

Adai AT, Date SV, Wieland S, Marcotte EM. LGL: creating a map of protein function with an algorithm for visualizing very large biological networks. J Mol Biol. 2004 Jun 25;340(1):179-90.

Oukka M, Wein MN, Glimcher LH.  Schnurri-3 (KRC) Interacts with c-Jun to Regulate the IL-2 Gene in T Cells. J Exp Med. 2004 Jan 5;199(1):15-24.

Yeh E, Kohli RM, Bruner SD, Walsh CT. Type II thioesterase restores activity of a NRPS module stalled with an aminoacyl-S-enzyme that cannot be elongated. Chembiochem. 2004 Sep 6;5(9):1290-3.

Afrikanova I, Yeh E, Bartos D, Watowich SS, Longmore GD. Oncogene cooperativity in Friend erythroleukemia: erythropoietin receptor activation by the env gene of SFFV leads to transcriptional upregulation of PU.1, independent of SFFV proviral insertion. Oncogene. 2002 Feb 14;21(8):1272-84.

McKenzie CA, Ohliger MA, Yeh EN, Price MD, Sodickson DK. Coil-by-coil image reconstruction with SMASH. Magn Reson Med. 2001 Sep;46(3):619-23.

McKenzie CA, Yeh EN, Sodickson DK.Improved spatial harmonic selection for SMASH image reconstructions. Magn Reson Med. 2001 Oct;46(4):831-6.

Sodickson DK, McKenzie CA, Ohliger MA, Yeh EN, Price MD.Recent advances in image reconstruction, coil sensitivity calibration, and coil array design for SMASH and generalized parallel MRI. MAGMA. 2002 Jan;13(3):158-63.

McKenzie CA, Yeh EN, Ohliger MA, Price MD, Sodickson DK.Self-calibrating parallel imaging with automatic coil sensitivity extraction. Magn Reson Med. 2002 Mar;47(3):529-38.

McKenzie CA, Lim D, Ransil BJ, Morrin M, Pedrosa I, Yeh EN, Sodickson DK, Rofsky NM. Shortening MR image acquisition time for volumetric interpolated breath-hold examination with a recently developed parallel imaging reconstruction technique: clinical feasibility. Radiology. 2004 Feb;230(2):589-94. Epub 2003 Dec 29.

Yiu G, He Z. Signaling mechanisms of the myelin inhibitors of axon regeneration. Curr Opin Neurobiol. 2003 Oct;13(5):545-51. Review.

Teillon SM, Yiu G, Walsh CA. Reelin is expressed in the accessory olfactory system, but is not a guidance cue for vomeronasal axons. Brain Res Dev Brain Res. 2003 Feb 16;140(2):303-7.

Tietjen I, Rihel JM, Cao Y, Koentges G, Zakhary L, Dulac C. Single-cell transcriptional analysis of neuronal progenitors. Neuron. 2003 Apr 24;38(2):161-75.

Heckers S, Zalesak M, Weiss AP, Ditman T, Titone D.Hippocampal activation during transitive inference in humans. Hippocampus. 2004;14(2):153-62.

Weiss AP, Zalesak M, DeWitt I, Goff D, Kunkel L, Heckers S. Impaired hippocampal function during the detection of novel words in schizophrenia. Biol Psychiatry. 2004 Apr 1;55(7):668-75.

* these authors contributed equally to this work

Updated 06/27/2008

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