Publications

• Publications - 2008
• Publications - 2007
• Publications - 2006
• Publications - 2005
• Publications 2002 - 2004

2008

Biddinger SB, Hernandez-Ono A, Rask-Madsen C, Haas JT, Alemán JO, Suzuki R, Scapa EF, Agarwal C, Carey MC, Stephanopoulos G, Cohen DE, King GL, Ginsberg HN, Kahn CR. Hepatic insulin resistance is sufficient to produce dyslipidemia and susceptibility to atherosclerosis. Cell Metab. 2008 Feb;7(2):125-34

Yang XH, Richardson AL, Torres-Arzayus MI, Zhou P, Sharma C, Kazarov AR, Andzelm MM, Strominger JL, Brown M, Hemler ME. CD151 accelerates breast cancer by regulating alpha 6 integrin function, signaling, and molecular organization.Cancer Res. 2008 May 1;68(9):3204-13.

Leader B, Baca QJ, Golan DE. Protein therapeutics: a summary and pharmacological classification. Nat Rev Drug Discov. 2008 Jan;7(1):21-39. Review.

Zaidi T, Bajmoczi M, Zaidi T, Golan DE, Pier GB.Disruption of CFTR-dependent lipid rafts reduces bacterial levels and corneal disease in a murine model of Pseudomonas aeruginosa keratitis. Invest Ophthalmol Vis Sci. 2008 Mar;49(3):1000-9.

Miyata S, Begun J, Troemel ER, Ausubel FM. DAF-16-Dependent Suppression of Immunity During Reproduction in Caenorhabditis elegans.Genetics. 2008 Feb;178(2):903-18. Epub 2008 Feb 1.

Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature. 2008 May 22;453(7194):544-547.

Chretien YR. Time to defibrillation after in-hospital cardiac arrest. N Engl J Med. 2008 Apr 10;358(15):1631.

Cohen S, Greenberg ME. Communication Between the Synapse and Nucleus in Neuronal Development, Plasticity, and Disease. Annu Rev Cell Dev Biol. 2008 Jul 10. [Epub ahead of print]

Cohen S, Zhou Z, Greenberg ME. Medicine. Activating a repressor. Science. 2008 May 30;320(5880):1172-3. No abstract available.

Militello KT, Refour P, Comeaux CA, Duraisingh MT. Antisense RNA and RNAi in protozoan parasites: working hard or hardly working? Mol Biochem Parasitol. 2008 Feb;157(2):117-26. Epub 2007 Oct 18.

Tonna S, Dandapani SV, Uscinski A, Appel GB, Schlöndorff JS, Zhang K, Denker BM, Pollak MR. Functional genetic variation in aminopeptidase A (ENPEP): lack of clear association with focal and segmental glomerulosclerosis (FSGS). Gene. 2008 Feb 29;410(1):44-52.

Henderson JM, Al-Waheeb S, Weins A, Dandapani SV, Pollak MR. Mice with altered alpha-actinin-4 expression have distinct morphologic patterns of glomerular disease. Kidney Int. 2008 Mar;73(6):741-50. Epub 2008 Jan 9.

Dougan M, Dranoff G. Inciting inflammation: the RAGE about tumor promotion. J Exp Med. 2008 Feb 18;205(2):267-70. Epub 2008 Feb 11.

Jensen P*, Farago AF*, Awatramani RB*, Scott M, Deneris E, Dymecki SM. Redefining the central serotonergic system based on genetic lineage. Nature Neurosci. 2008 Apr;11(4):417-9. Epub 2008 Mar 16 . [*equal contribution]

Marson A, Foreman R, Chevalier B, Bilodeau S, Kahn M, Young RA, Jaenisch R.Wnt signaling promotes reprogramming of somatic cells to pluripotency. Cell Stem Cell. 2008 Aug 7;3(2):132-5. N

Wernig M, Lengner CJ, Hanna J, Lodato MA, Steine E, Foreman R, Staerk J, Markoulaki S, Jaenisch R. A drug-inducible transgenic system for direct reprogramming of multiple somatic cell types. Nat Biotechnol. 2008 Aug;26(8):916-24. Epub 2008 Jul 1.

Hanna J, Markoulaki S, Schorderet P, Carey BW, Beard C, Wernig M, Creyghton MP, Steine EJ, Cassady JP, Foreman R, Lengner CJ, Dausman JA, Jaenisch R. Direct reprogramming of terminally differentiated mature B lymphocytes to pluripotency.Cell. 2008 Apr 18;133(2):250-64. Erratum in: Cell. 2008 Jul 25;134(2):365.

Brambrink T, Foreman R, Welstead GG, Lengner CJ, Wernig M, Suh H, Jaenisch R.Sequential expression of pluripotency markers during direct reprogramming of mouse somatic cells. Cell Stem Cell. 2008 Feb 7;2(2):151-9

Galvin BD, Kim S, Horvitz HR. Caenorhabditis elegans genes required for the engulfment of apoptotic corpses function in the cytotoxic cell deaths induced by mutations in lin-24 and lin-33.Genetics. 2008 May;179(1):403-17. Epub 2008 May 5.

Barral DC, Cavallari M, McCormick PJ, Garg S, Magee AI, Bonifacino JS, De Libero G, Brenner MB. CD1a and MHC Class I Follow a Similar Endocytic Recycling Pathway. Traffic. 2008 Jun 28. [Epub ahead of print]

Geiben-Lynn R, Greenland JR, Frimpong-Boateng K, Letvin NL. Kinetics of recombinant adenovirus type 5, vaccinia virus, modified vaccinia ankara virus, and DNA antigen expression in vivo and the induction of memory T-lymphocyte responses. Clin Vaccine Immunol. 2008. 15(4):691-6.

Zheng H, Jin B, Henrickson SE, Perelson AS, von Andrian UH, Chakraborty AK. How antigen quantity and quality determine T-cell decisions in lymphoid tissue. Mol Cell Biol. 2008 Jun;28(12):4040-51. Epub 2008 Apr 21.

Henrickson SE, Mempel TR, Mazo IB, Artyomov MN, Zheng H, Liu B, Flynn M, Senman B, Junt T, Wong HC, Chakraborty AK, UH von Andrian.  T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation.  Nat. Immunol. (2008) 9: 282-291.

Hill SJ, Berkowitz R, Granter SR, Hirsch MS.  Pagetoid Lesions of the Vulva: A Collision Between Malignant Melanoma and Extramammary Paget Disease.  Int J Gynecol Pathol. 2008 Apr;27(2):292-296.

Sarker KP, Kataoka H, Chan A, Netherton SJ, Pot I, Huynh MA, Feng X, Bonni A, Riabowol K, Bonni S. ING2 as a novel mediator of transforming growth factor-beta-dependent responses in epithelial cells. J Biol Chem. 2008 May 9;283(19):13269-79. Epub 2008 Mar 11.

Stegmüller J, Huynh MA, Yuan Z, Konishi Y, Bonni A., TGFbeta-Smad2 signaling regulates the Cdh1-APC/SnoN pathway of axonal morphogenesis. J Neurosci. 2008 Feb 20;28(8):1961-9.

Ma YC, Song MR, Park JP, Henry Ho HY, Hu L, Kurtev MV, Zieg J, Ma Q, Pfaff SL, Greenberg ME. Regulation of motor neuron specification by phosphorylation of neurogenin 2. Neuron. 2008 Apr 10;58(1):65-77. Review.

Maharaj AS, Walshe TE, Saint-Geniez M, Venkatesha S, Maldonado AE, Himes NC, Matharu KS, Karumanchi SA, D'Amore PA. VEGF and TGF-beta are required for the maintenance of the choroid plexus and ependyma. J Exp Med. 2008 Feb 18;205(2):491-501. Epub 2008 Feb 11.

Bryan BA, Walshe TE, Mitchell DC, Havumaki JS, Saint-Geniez M, Maharaj AS, Maldonado AE, D'Amore PA. Coordinated vascular endothelial growth factor expression and signaling duringskeletal myogenic differentiation. Mol Biol Cell. 2008 Mar;19(3):994-1006. Epub 2007 Dec 19.

Maharaj AS, Walshe TE, Saint-Geniez M, Venkatesha S, Maldonado AE, Himes NC,Matharu KS, Karumanchi SA, D'Amore PA. VEGF and TGF-beta are required for the maintenance of the choroid plexus and ependyma. J Exp Med. 2008 Feb 18;205(2):491-501. Epub 2008 Feb 11. PMID: 18268040 [PubMed - in process]

Bryan BA, Walshe TE, Mitchell DC, Havumaki JS, Saint-Geniez M, Maharaj AS, Maldonado AE, D'Amore PA. Coordinated vascular endothelial growth factor expression and signaling duringskeletal myogenic differentiation. Mol Biol Cell. 2008 Mar;19(3):994-1006. Epub 2007 Dec 19. PMID: 18094043 [PubMed - in process]

Marson A, Levine SS, Cole MF, Frampton GM, Brambrink T, Johnstone S, Guenther MG, Johnston WK, Wernig M, Newman J, Calabrese JM, Dennis LM, Volkert TL, Gupta S, Love J, Hannett N, Sharp PA, Bartel DP, Jaenisch R, Young RA. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell. 2008 Aug 8;134(3):521-33.

Marson A, Foreman R, Chevalier B, Bilodeau S, Kahn M, Young RA, Jaenisch R. Wnt signaling promotes reprogramming of somatic cells to pluripotency. Cell Stem Cell. 2008 Aug 7;3(2):132-5.

Koivunen JP, Mermel C, Zejnullahu K, Murphy C, Lifshits E, Holmes AJ, Choi HG, Kim J, Chiang D, Thomas R, Lee J, Richards WG, Sugarbaker DJ, Ducko C, Lindeman N, Marcoux JP, Engelman JA, Gray NS, Lee C, Meyerson M, Jänne PA. EML4-ALK fusion gene and efficacy of an ALK kinase inhibitor in lung cancer. Clin Cancer Res. 2008 Jul 1;14(13):4275-83.

Lai T, Jabaudon D, Molyneaux BJ, Azim E, Arlotta P, Menezes JR, Macklis JD. SOX5 Controls the Sequential Generation of Distinct Corticofugal Neuron Subtypes. Neuron. 2008 Jan 24;57(2):232-247.

Arlotta P, Molyneaux BJ, Jabaudon D, Yoshida Y, Macklis JD. Ctip2 controls the differentiation of medium spiny neurons and the establishment of the cellular architecture of the striatum. J Neurosci. 2008 Jan 16;28(3):622-32.

Yoshida T, Hazan I, Zhang J, Ng SY, Naito T, Snippert HJ, Heller EJ, Qi X, Lawton LN, Williams CJ, Georgopoulos K. The role of the chromatin remodeler Mi-2beta in hematopoietic stem cell self-renewal and multilineage differentiation. Genes Dev. 2008 May 1;22(9):1174-89.

Philippakis AA, Qureshi AM, Berger MF, Bulyk ML. Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments. J Comput Biol. 2008 Jul 23. [Epub ahead of print]

Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, Peña-Castillo L, Alleyne TM, Mnaimneh S, Botvinnik OB, Chan ET, Khalid F, Zhang W, Newburger D, Jaeger SA, Morris QD, Bulyk ML, Hughes TR. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell. 2008 Jun 27;133(7):1266-76.

Warner JB, Philippakis AA, Jaeger SA, He FS, Lin J, Bulyk ML. Systematic identification of mammalian regulatory motifs' target genes and functions. Nat Methods. 2008 Apr;5(4):347-53. Epub 2008 Mar 2.

Warner JB, Philippakis AA, Jaeger SA, He FS, Lin J, Bulyk ML. Systematic identification of mammalian regulatory motifs' target genes and functions. Nat Methods. 2008 Mar 2 [Epub ahead of print] PMID: 18311145.

Ponce CR, Lomber SG, Born RT. Integrating motion and depth via parallel pathways. Nat Neurosci. 2008 Feb;11(2):216-23. Epub 2008 Jan 13.

Xie L, Palmsten K, MacDonald B, Kieran MW, Potenta S, Vong S, Kalluri R. Basement membrane derived fibulin-1 and fibulin-5 function as angiogenesis inhibitors and suppress tumor growth. Exp Biol Med (Maywood). 2008 Feb;233(2):155-62.

de la Iglesia N, Konopka G, Puram SV, Chan JA, Bachoo RM, You MJ, Levy DE, Depinho RA, Bonni A. Identification of a PTEN-regulated STAT3 brain tumor suppressor pathway. Genes Dev. 2008 Feb 15;22(4):449-62. Epub 2008 Feb 7.

Rydzak CE, Goldie SJ. Cost-Effectiveness of Rapid Point-of-Care Prenatal Syphilis Screening in Sub-Saharan Africa. Sex Transm Dis. 2008 Jul 2. [Epub ahead of print]

Sankaran VG, Orkin SH, Walkley CR. Rb intrinsically promotes erythropoiesis by coupling cell cycle exit with mitochondrial biogenesis.Genes Dev. 2008 Feb 15;22(4):463-475. Epub 2008 Feb 7. PMID: 18258751 [PubMed - as supplied by publisher]

Uda M, Galanello R, Sanna S, Lettre G, Sankaran VG, Chen W, Usala G, Busonero F, Maschio A, Albai G, Piras MG, Sestu N, Lai S, Dei M, Mulas A, Crisponi L, Naitza S, Asunis I, Deiana M, Nagaraja R, Perseu L, Satta S, Cipollina MD, Sollaino C, Moi P, Hirschhorn JN, Orkin SH, Abecasis GR, Schlessinger D, Cao A.Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of beta-thalassemia. Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1620-5. Epub 2008 Feb 1. PMID: 18245381 [PubMed - indexed for MEDLINE]

Seeburg DP, Sheng M.Activity-induced Polo-like kinase 2 is required for homeostatic plasticity of hippocampal neurons during epileptiform activity. J Neurosci. 2008 Jun 25;28(26):6583-91.

Seeburg DP, Feliu-Mojer M, Gaiottino J, Pak DT, Sheng M. Critical role of CDK5 and Polo-like kinase 2 in homeostatic synaptic plasticity during elevated activity. Neuron. 2008 May 22;58(4):571-83.

Shankar GM, Li S, Mehta TH, Garcia-Munoz A, Shepardson NE, Smith I, Brett FM, Farrell MA, Rowan MJ, Lemere CA, Regan CM, Walsh DM, Sabatini BL, Selkoe DJ. Amyloid-beta protein dimers isolated directly from Alzheimer's brains impair synaptic plasticity and memory. Nat Med. 2008 Aug;14(8):837-42. Epub 2008 Jun 22.

Cappelletti M, Fregni F, Shapiro K, Pascual-Leone A, Caramazza A. Processing nouns and verbs in the left frontal cortex: a transcranial magnetic stimulation study. J Cogn Neurosci. 2008 Apr;20(4):707-20.

Shendure JA, Porreca GJ, Church GM. Overview of DNA sequencing strategies.Curr Protoc Mol Biol. 2008 Jan;Chapter 7:Unit 7.1. Review.

Song Z, Reinhardt K, Buzdon M, Liao P. Association between support group attendance and weight loss after Roux-en-Y gastric bypass. Surg Obes Relat Dis. 2008; 4: 100-103.

Stevens AL, Wishnok JS, Chai DH, Grodzinsky AJ, Tannenbaum SR. A sodium dodecyl sulfate-polyacrylamide gel electrophoresis-liquid chromatography tandem mass spectrometry analysis of bovine cartilage tissue response to mechanical compression injury and the inflammatory cytokines tumor necrosis factor alpha and interleukin-1beta. Arthritis Rheum. 2008 Feb;58(2):489-500.

Langenau DM, Keefe MD, Storer NY, Jette CA, Smith AC, Ceol CJ, Bourque C, Look AT, Zon LI. Co-injection strategies to modify radiation sensitivity and tumor initiation in transgenic Zebrafish. Oncogene. 2008 Jul 10;27(30):4242-8. Epub 2008 Mar 17.

Subtelny AO, Hartman MC, Szostak JW. Ribosomal synthesis of N-methyl peptides. J Am Chem Soc. 2008 May 14; 130 (19): 6131-6.

Tsai LL, Mair RW, Li CH, Rosen MS, Patz S, Walsworth RL. Posture-dependent Human (3)He Lung Imaging in an Open-access MRI System Initial Results. Acad Radiol. 2008 Jun;15(6):728-39.

Viswanathan SR, Daley GQ, Gregory RI. Selective Blockade of MicroRNA Processing by Lin-28.Science. 2008 Feb 21; [Epub ahead of print] PMID: 18292307 [PubMed - as supplied by publisher]

Wein MN, Jones DC, Glimcher LH. Lentivirus delivery of shRNA constructs into osteoblasts. Methods Mol Biol. 2008;455:149-55.

Mukherjee S, Raje N, Schoonmaker JA, Liu JC, Hideshima T, Wein MN, Jones DC, Vallet S, Bouxsein ML, Pozzi S, Chhetri S, Seo YD, Aronson JP, Patel C, Fulciniti M, Purton LE, Glimcher LH, Lian JB, Stein G, Anderson KC, Scadden DT. Pharmacologic targeting of a stem/progenitor population in vivo is associated with enhanced bone regeneration in mice. J Clin Invest. 2008 Feb;118(2):491-504.

Cassa CA, Wieland SC, Mandl KD. Re-identification of home addresses from spatial locations anonymized by Gaussian skew. Int J Health Geogr. 2008 Aug 12;7(1):45. [Epub ahead of print]

Han S, Witt RM, Santos TM, Polizzano C, Sabatini BL, Ramesh V. Pam (Protein associated with Myc) functions as an E3 ubiquitin ligase and regulates TSC/mTOR signaling. Cell Signal. 2008 Jun;20(6):1084-91. Epub 2008 Feb 1.

Choi PS, Zakhary L, Choi WY, Caron S, Alvarez-Saavedra E, Miska EA, McManus M, Harfe B, Giraldez AJ, Horvitz RH, Schier AF, Dulac C. Members of the miRNA-200 family regulate olfactory neurogenesis.Neuron. 2008 Jan 10;57(1):41-55.

Kanazawa T*, Zappaterra MD*, Hasegawa A*, Wright AP, Newman-Smith ED, Karolyn F. Buttle, Kent McDonald, Carmen A. Mannella, Alexander M. van der Bliek.  The C. elegans Opa1 Homologue EAT-3 Is Essential for Resistance to Free Radicals. PLoS Genetics. 2008 Feb 28; 4(2).

Updated August 16, 2008

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